DRSC/TRiP Functional Genomics Resources

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Protein Alignment Dsp1 and tox4

DIOPT Version :9

Sequence 1:NP_001138203.1 Gene:Dsp1 / 117294 FlyBaseID:FBgn0278608 Length:397 Species:Drosophila melanogaster
Sequence 2:XP_012814066.1 Gene:tox4 / 395028 XenbaseID:XB-GENE-993803 Length:658 Species:Xenopus tropicalis


Alignment Length:109 Identity:32/109 - (29%)
Similarity:56/109 - (51%) Gaps:8/109 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly   245 YEAEMQNY---VPPKGAVVGRGK-----KRKQIKDPNAPKRSLSAFFWFCNDERNKVKALNPEFG 301
            ::.:|:::   ..||..:|.:.|     |:|:.||||.|::.|||:..|..|.:..:|..||...
 Frog   245 HDEDMEDFRRITAPKNIIVEQAKKPKTPKKKKKKDPNEPQKPLSAYALFFRDTQAAIKGQNPNAT 309

  Fly   302 VGDIAKELGRKWSDVDPEVKQKYESMAERDKARYEREMTEYKTS 345
            .|:::|.:...|..:..|.||.|:...|..|..|.:.:..||.:
 Frog   310 FGEVSKIVASMWDSLGEEQKQVYKRKTEAAKKEYLKALALYKAN 353

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Dsp1NP_001138203.1 HMG-box 182..252 CDD:294061 1/6 (17%)
HMGB-UBF_HMG-box 275..339 CDD:238686 19/63 (30%)
tox4XP_012814066.1 HMG-box 283..348 CDD:238037 19/64 (30%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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