DRSC/TRiP Functional Genomics Resources

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Protein Alignment Dsp1 and hmg-5

DIOPT Version :9

Sequence 1:NP_001138203.1 Gene:Dsp1 / 117294 FlyBaseID:FBgn0278608 Length:397 Species:Drosophila melanogaster
Sequence 2:NP_501245.1 Gene:hmg-5 / 177543 WormBaseID:WBGene00001975 Length:204 Species:Caenorhabditis elegans


Alignment Length:216 Identity:46/216 - (21%)
Similarity:74/216 - (34%) Gaps:72/216 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   172 SPMSRVKADAK--PRG-RMTAYAYFVQTCREEHKKKHPD--ETVIFAEFSRKCAERWKTMVDKEK 231
            :|.:.|.|...  |.| .:..||.|:   :|..|....|  .|.:..|.|.|    ||.:...||
 Worm    16 APRASVAASTPQVPLGMNINPYAMFI---KENFKANTSDMKRTDLMKELSGK----WKALSISEK 73

  Fly   232 KRFHEM-------------------------------AEKDKQRYEAEMQNYVPPKGAVVGRGKK 265
            .::.|:                               ||:..:|:..|             |.:|
 Worm    74 DKYTELSKNYNAQKLDDFMKLSTEEQKKLVDSAKEKKAERASRRHAKE-------------RREK 125

  Fly   266 RKQIKDPNAPKRSLSAFFWFCNDERNKVKALNPEFGVG----DIAKELGRKWSDVDPEVKQKYES 326
            |||...|:.|.   ||:..|..::.:         |.|    :..||...:|.......|:||..
 Worm   126 RKQSGRPSVPP---SAYALFIKEKLS---------GAGMESKEKMKEAVAQWKAFTDSQKKKYTD 178

  Fly   327 MAERDKARYEREMTEYKTSGK 347
            .|::.|..|...:.:::...|
 Worm   179 EAKKLKDEYHVVLQKWEAEQK 199

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Dsp1NP_001138203.1 HMG-box 182..252 CDD:294061 21/105 (20%)
HMGB-UBF_HMG-box 275..339 CDD:238686 15/67 (22%)
hmg-5NP_501245.1 NHP6B <37..187 CDD:227935 39/181 (22%)
HMGB-UBF_HMG-box 132..192 CDD:238686 16/71 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5648
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR48112
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.910

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