DRSC/TRiP Functional Genomics Resources

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Protein Alignment Dsp1 and Hmgb3

DIOPT Version :9

Sequence 1:NP_001138203.1 Gene:Dsp1 / 117294 FlyBaseID:FBgn0278608 Length:397 Species:Drosophila melanogaster
Sequence 2:NP_001280552.1 Gene:Hmgb3 / 15354 MGIID:1098219 Length:200 Species:Mus musculus


Alignment Length:214 Identity:96/214 - (44%)
Similarity:140/214 - (65%) Gaps:21/214 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly   182 KPRGRMTAYAYFVQTCREEHKKKHPDETVIFAEFSRKCAERWKTMVDKEKKRFHEMAEKDKQRYE 246
            ||:|:|:|||:||||||||||||:|:..|.|||||:||:||||||..|||.:|.|||:.||.||:
Mouse     8 KPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSSKEKSKFDEMAKADKVRYD 72

  Fly   247 AEMQNYVPPKGAVVGRGKKRKQIKDPNAPKRSLSAFFWFCNDERNKVKALNPEFGVGDIAKELGR 311
            .||::|.|.||     |||:   ||||||||..|.||.||::.|.|:|:.||...:||:||:||.
Mouse    73 REMKDYGPAKG-----GKKK---KDPNAPKRPPSGFFLFCSEFRPKIKSTNPGISIGDVAKKLGE 129

  Fly   312 KWSDVDPEVKQKYESMAERDKARYEREMTEYKTSGKIAMSAPSMQASMQAQAQKAALLAAAAQQQ 376
            .|:::....||.|.:.|.:.|.:||:::.:||:.||.             ...|.....|..:.:
Mouse   130 MWNNLSDNEKQPYVTKAAKLKEKYEKDVADYKSKGKF-------------DGAKGPAKVARKKVE 181

  Fly   377 HQQLEEQHDDDDGDGDDDE 395
            .::.||:.::::.:.::||
Mouse   182 EEEEEEEEEEEEEEEEEDE 200

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Dsp1NP_001138203.1 HMG-box 182..252 CDD:294061 47/69 (68%)
HMGB-UBF_HMG-box 275..339 CDD:238686 27/63 (43%)
Hmgb3NP_001280552.1 HMG_box_2 13..78 CDD:370242 44/64 (69%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 71..97 18/33 (55%)
HMG_box 93..160 CDD:366139 27/66 (41%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 161..200 7/51 (14%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 116 1.000 Domainoid score I5930
eggNOG 1 0.900 - - E1_COG5648
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 213 1.000 Inparanoid score I3622
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000133
OrthoInspector 1 1.000 - - otm43054
orthoMCL 1 0.900 - - OOG6_100324
Panther 1 1.100 - - O PTHR48112
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R3288
SonicParanoid 1 1.000 - - X111
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1312.850

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