DRSC/TRiP Functional Genomics Resources

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Protein Alignment Adra2b and Oamb

DIOPT Version :9

Sequence 1:NP_033763.3 Gene:Adra2b / 11552 MGIID:87935 Length:448 Species:Mus musculus
Sequence 2:NP_001262774.1 Gene:Oamb / 43982 FlyBaseID:FBgn0024944 Length:751 Species:Drosophila melanogaster


Alignment Length:613 Identity:159/613 - (25%)
Similarity:236/613 - (38%) Gaps:216/613 - (35%)


- Green bases have known domain annotations that are detailed below.


Mouse     5 EPYSVQATAAIASAITFLILFTIFGNALVILAVLTSRSLRAPQNLFLVSLAAADILVATLIIPFS 69
            ||.::.:.|    .:.|:.:..|.||.|||.||..|..||:..|.|:|:||.||:||...::|||
  Fly    17 EPANLISLA----VLEFINVLVIGGNCLVIAAVFCSNKLRSVTNFFIVNLAVADLLVGLAVLPFS 77

Mouse    70 LANELLGYWYFWRAWCEVYLALDVLFCTSSIVHLCAISLDRYWAVSRALEYNSKRTPRRIKCIIL 134
            ...|:...|.|...||.::||:||..||:||::|||||||||.||:|.:.|.|..:.::.|.:|.
  Fly    78 ATWEVFKVWIFGDLWCRIWLAVDVWMCTASILNLCAISLDRYVAVTRPVTYPSIMSTKKAKSLIA 142

Mouse   135 TVWLIAAVISLPPLIYKGDQR-------PE----------------------------------- 157
            .:|:::..|..|||:...||:       |:                                   
  Fly   143 GIWVLSFFICFPPLVGWKDQKAVIQPTYPKGNHTLYYTTTMSSSEDGQLGLDSIKDQGEASLPPS 207

Mouse   158 ----------------------------------------------------------------P 158
                                                                            |
  Fly   208 PPHIGNGNAYNPYDPGFAPIDGSAEIRIAAIDSTSTSTTATTTTTASSSSTTETEMDLDLLNAPP 272

Mouse   159 HGLPQ---------CELNQEAWYILASSIGSFFAPCLIMILVYLRIYVIAKRS------------ 202
            ...||         |||..:..|:|.|::|||:.|..:|:..|.|||..|.|:            
  Fly   273 QNRPQTISGSCPWKCELTNDRGYVLYSALGSFYIPMFVMLFFYWRIYRAAVRTTRAINQGFKTTK 337

Mouse   203 HCRGLGAK-----------RGSGEGESKKPHPAAG--------GVPASA--------------KV 234
            ..:|:|::           ||.|..:....|....        |.|:..              |:
  Fly   338 GSKGIGSRFEEQRLTLRIHRGRGSNQQDSMHSNGSTQSTTTTLGTPSPERLSKYATRRLHHHDKI 402

Mouse   235 PTLVSPLSS--VGEANGHPKPPREKEEGETPEDPEARALPPNWSALPRSVQDQKKGTSGATAEKG 297
            ...||..||  :.|..||.....|:.:              :.:||   ......||:      |
  Fly   403 KISVSYPSSENISELAGHGDVGHERRQ--------------SGNAL---FAVHYNGTN------G 444

Mouse   298 AEEDEEEVEECEPQTLPASPASVFNPPLQQPQTSRVLATLRGQVLLSKNVGVASG--------QW 354
            .|..|.::...:.|...||...:        |..:.|..|..:   ..|...|.|        :.
  Fly   445 RESTESQLYRQQQQHGVASSCYL--------QVGKGLPELARR---QSNTSEAGGSGHSRPANKK 498

Mouse   355 WRRRTQLSREKRFTF------VLAVVIGVFVVCWFPFFFSYSLGAICPQHCKVPHGLFQFFFWIG 413
            ..||...::.|||..      .||:::|:|:.||.|||..|.:...| |.|..|. ||...||:|
  Fly   499 MGRRNIKAQVKRFRMETKAAKTLAIIVGMFIFCWCPFFTMYIIRPFC-QDCVDPL-LFSVLFWLG 561

Mouse   414 YCNSSLNPVIYTIFNQDFRRAFRRILCR 441
            ||||::||:||.:|::|||.||:||:||
  Fly   562 YCNSAVNPMIYALFSKDFRFAFKRIICR 589

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Adra2bNP_033763.3 7tmA_alpha2B_AR 7..435 CDD:320444 151/603 (25%)
TM helix 1 14..40 CDD:320444 9/25 (36%)
TM helix 2 47..73 CDD:320444 12/25 (48%)
TM helix 3 85..115 CDD:320444 19/29 (66%)
TM helix 4 127..150 CDD:320444 7/22 (32%)
TM helix 5 169..198 CDD:320444 12/28 (43%)
PRK12323 <209..354 CDD:237057 31/187 (17%)
TM helix 6 362..392 CDD:320444 13/35 (37%)
TM helix 7 403..428 CDD:320444 13/24 (54%)
OambNP_001262774.1 7tm_4 29..>154 CDD:304433 55/124 (44%)
7tm_1 37..>181 CDD:278431 59/143 (41%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.910

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