DRSC/TRiP Functional Genomics Resources

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Protein Alignment CIRBP and NAM8

DIOPT Version :10

Sequence 1:NP_001287758.1 Gene:CIRBP / 1153 HGNCID:1982 Length:297 Species:Homo sapiens
Sequence 2:NP_011954.1 Gene:NAM8 / 856486 SGDID:S000001128 Length:523 Species:Saccharomyces cerevisiae


Alignment Length:268 Identity:60/268 - (22%)
Similarity:98/268 - (36%) Gaps:67/268 - (25%)


- Green bases have known domain annotations that are detailed below.


Human     8 LFVGGLSFDTNEQSLEQVF-SKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKS 71
            :|||.|:.:..|..|.::| ::|...|...:|.|:.|..|:|:|||.|.|.|:.:.|:..|.|..
Yeast   165 IFVGDLAPNVTESQLFELFINRYASTSHAKIVHDQVTGMSKGYGFVKFTNSDEQQLALSEMQGVF 229

Human    72 VDGRQIRVDQ--------AGKSSDNRSRGYRGGSAGGRGFFRGGRGRGRGF-SRGGGDRGYGGNR 127
            ::||.|:|..        :|.:..|||............|.    .:|:.| |.|..:.|:..|.
Yeast   230 LNGRAIKVGPTSGQQQHVSGNNDYNRSSSSLNNENVDSRFL----SKGQSFLSNGNNNMGFKRNH 290

Human   128 FESRSGGYGGSRDYYSSRSQS---------------GGYSDRSSGGSYRDSYDSYG--------- 168
            .         |:..|..:.|.               ||.|...:....|..:..:|         
Yeast   291 M---------SQFIYPVQQQPSLNHFTDPNNTTVFIGGLSSLVTEDELRAYFQPFGTIVYVKIPV 346

Human   169 -----------KSHSEGATLLWPAVGAR-FTLVPSPSTLGWTLRPCHCACPEEAHLSSQSHFYRR 221
                       :..:|.|     ..|.: |.:..|...|.|.......|..::|.||:.....::
Yeast   347 GKCCGFVQYVDRLSAEAA-----IAGMQGFPIANSRVRLSWGRSAKQTALLQQAMLSNSLQVQQQ 406

Human   222 ---TQKPN 226
               .|:||
Yeast   407 QPGLQQPN 414

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CIRBPNP_001287758.1 RRM_CIRBP_RBM3 6..85 CDD:409883 28/85 (33%)
NAM8NP_011954.1 RRM1_NGR1_NAM8_like 55..144 CDD:410023
RRM2_SECp43_like 162..241 CDD:409781 27/75 (36%)
RRM3_NGR1_NAM8_like 312..383 CDD:409782 11/75 (15%)
Blue background indicates that the domain is not in the aligned region.

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