DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CIRBP and SF2

DIOPT Version :10

Sequence 1:NP_001287758.1 Gene:CIRBP / 1153 HGNCID:1982 Length:297 Species:Homo sapiens
Sequence 2:NP_652611.1 Gene:SF2 / 53443 FlyBaseID:FBgn0283477 Length:255 Species:Drosophila melanogaster


Alignment Length:240 Identity:62/240 - (25%)
Similarity:87/240 - (36%) Gaps:104/240 - (43%)


- Green bases have known domain annotations that are detailed below.


Human     4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMN 68
            :|.:::||.|..|...:.::.:|.|:|:::.|    |.:.:|...|.||.||:..||.||:.|.:
  Fly     5 NECRIYVGNLPPDIRTKDIQDLFHKFGKVTFV----DLKNRRGPPFAFVEFEDARDADDAVKARD 65

Human    69 GKSVDGRQIRVD---------QAGKSSDNRSRGYRGGSAGGRG---------------------- 102
            |...||.::||:         ..|.:.::|||. .||..||||                      
  Fly    66 GYDYDGYRLRVEFPRGGGPGSYRGGNRNDRSRD-GGGRMGGRGPPAKRSQYRVMVTGLPASGSWQ 129

Human   103 --------------------------FFR--------------------------------GGRG 109
                                      |.|                                |...
  Fly   130 DLKDHMREAGDVCFADTYKDGSGVVEFLRHEDMKYAIKKLDDSRFRSHEGEVAYIRVREDSGDND 194

Human   110 RGRGFSRGGGDRGYGGNRFESRSGGYGGSRDYYSSRSQSGGYSDR 154
            ||.|   |||..|.||.     ||| ||||| |..||:|..:|.|
  Fly   195 RGGG---GGGSGGGGGG-----SGG-GGSRD-YRDRSRSRSFSSR 229

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CIRBPNP_001287758.1 RRM_CIRBP_RBM3 6..85 CDD:409883 26/87 (30%)
SF2NP_652611.1 RRM_SF 3..80 CDD:473069 26/78 (33%)
RRM2_SRSF1_like 115..188 CDD:410013 2/72 (3%)

Return to query results.
Submit another query.