DRSC/TRiP Functional Genomics Resources

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Protein Alignment CIRBP and rbm-3.1

DIOPT Version :9

Sequence 1:NP_001287758.1 Gene:CIRBP / 1153 HGNCID:1982 Length:297 Species:Homo sapiens
Sequence 2:NP_493022.1 Gene:rbm-3.1 / 173070 WormBaseID:WBGene00011155 Length:83 Species:Caenorhabditis elegans


Alignment Length:77 Identity:34/77 - (44%)
Similarity:45/77 - (58%) Gaps:0/77 - (0%)


- Green bases have known domain annotations that are detailed below.


Human     8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSV 72
            ::||...|.|.|:.|...||..|||:.|.:|.||||.|.|||.|:.|.....|:.|:..|||...
 Worm     7 VYVGNAPFQTTEEELGNFFSSIGQINNVRIVCDRETGRPRGFAFIEFAEEGSAQRAVEQMNGAEF 71

Human    73 DGRQIRVDQAGK 84
            :||.:||:.|.|
 Worm    72 NGRPLRVNLANK 83

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CIRBPNP_001287758.1 RRM <3..>90 CDD:223796 34/77 (44%)
RRM_CIRBP_RBM3 6..85 CDD:240895 34/77 (44%)
rbm-3.1NP_493022.1 RRM_SF 8..83 CDD:388407 33/74 (45%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000446
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100265
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.810

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