Sequence 1: | NP_446153.2 | Gene: | Cacna1f / 114493 | RGDID: | 621535 | Length: | 1980 | Species: | Rattus norvegicus |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_001259619.1 | Gene: | para / 32619 | FlyBaseID: | FBgn0285944 | Length: | 2145 | Species: | Drosophila melanogaster |
Alignment Length: | 2116 | Identity: | 501/2116 - (23%) |
---|---|---|---|
Similarity: | 856/2116 - (40%) | Gaps: | 610/2116 - (28%) |
- Green bases have known domain annotations that are detailed below.
Rat 8 KDTTPEPSPANGTG-PGPEWGLCPGPPTVGTDTSGASGLGTPRRRTQ--HNKHKTVVVASAQR-- 67
Rat 68 ----SPRALFCLTLTNPIRRSCISIVEWKPFDILILLTIFANCVALGVYIPFPEDDSNTANHNLE 128
Rat 129 QVEYVFLVIFTVETVLKIVAYGLVLHPSAYIRNGWNLLDFIIVVVGLFSVLLEQGPGRPGDAPHT 193
Rat 194 GGKPGGFDVKALRAFRVLRPLRLVSGVPSLHIVLNSIMKALVPLLHIALLVLFVIIIYAIIGLEL 258
Rat 259 FLGRMHKTC--------------------YFLGSDMEAEEDPS---P-CAS-SGSGRSCTLNQTE 298
Rat 299 CRGRWPGPNGGITNFDNFFFAMLTVFQCITMEGWTDVLYWMQDAMGYELPW--VYFVSLVIFGSF 361
Rat 362 FVLNLVLGVLSGEFSKEREKAKAR--GDFQKLREKQQ--------MEEDLRGYLDWITQ---AEE 413
Rat 414 LDLHDP----------------------------------------------------------- 419
Rat 420 ---------SVDGNLASLAEEGRAGHRPQLSELTNRRRGRLRW---------------------- 453
Rat 454 -----------------------------FSHSTRSTH----STSSHASL--------------- 470
Rat 471 ---------------------------------------PASDTGSIT--DTPGDEDEEEGTMAS 494
Rat 495 C--TLCLNKIMKTKVCRHFRRANRGL-----------------RARCRRAVKSNA-------CYW 533
Rat 534 A-------VLLLVF-------------LNTLTIASEHHGQPVWLTQTQEYANKVLLCLFTVEMLL 578
Rat 579 KLYGLGPSVYVASFFNRFDCFVVCGGILETTLVEVGAMQPLGISVLRCVRLLRIFKVTRHWASLS 643
Rat 644 NLVASLLNSMKSIASLLLLLFLFIIIFSLLGMQLFGGKFN-----FDQTHTKRSTFDTFPQALLT 703
Rat 704 VFQILTGEDWNVVMYDGIMAYGGPFFPGMLVCV-YFIILFICGNYILLNVFLAIAVDNLASGD-- 765
Rat 766 -----------AGAAKDKGREKS-------------------------------------SEG-- 780
Rat 781 -------------------------------------------------------NPPQENKVLV 790
Rat 791 PGGENEDTEGTKS--------------EGAAPGMEEEEEEE--------EEEEEENGA------- 826
Rat 827 ------GHVELLQEVVPKE-------KVVPIPEG---SAFFCLSQTNPLRKACHTLIHHHVFTSL 875
Rat 876 ILVFIILSSVSLAAED---PIRAHSFRNHILGYFDYAFTSIFTVEILLKMTVFGAFLHQGSFCRS 937
Rat 938 WFNLLDLLVVSVSLISFG---IHSSAISVVKILRVLRVLRPLRAINRAKGLKHVVQCVFVAIRTI 999
Rat 1000 GNIMIVTTLLQFMFACIGVQLFKGKFYSCTDEAKHTLKECKGSFLIYPDGDVSRPLVRERLWVNS 1064
Rat 1065 DFNFDNVLSAMMALFTVSTFEGWPALLYKAIDAHAEDEGPIYNYHVEISVFFIVYIIIIAFFMMN 1129
Rat 1130 IFVGFVIITFRAQGEQEYQNCELDKNQRQCVEY----------ALKAQPLRRYIPKNPHQYRVWA 1184
Rat 1185 TVNSAAFEYLMFLLILLNTVALAMQHYEQTAPFNYAMDILNMVFTGLFTVEMVLKIIAFKPKHYF 1249
Rat 1250 ADAWNTFDALIVVGSVVDIAVTEVNNGGHLGESSEDSSRISITFFRLFRVM---RLVKLLSKGEG 1311
Rat 1312 IRTLLWTFIKSFQALPYVALLIAMIFFIYAVIGMQMFGKVALQDGTQINRNNNFQTFPQAVLLLF 1376
Rat 1377 RCATGEAWQEIMLASLPGNRCD-PESDFG-PGEEFTCGS-NFAIVYFISFFMLCAFLIINLFVAV 1438
Rat 1439 IMDNFDYLTRD-WSILGPHHLDEFKRIWSEYDPGAKGRIKHLDVVALLRRIQPPLGFGKLCPHRV 1502
Rat 1503 ACKRLVAMNVPLNSDGTVTFNATLFALVRTSLRIKTEGNLDQANQELRMVIKKIWKRIKQKLLDE 1567
Rat 1568 VIPPPDEE-----EVTVGK---FYATFLIQDYFRKFRRRKEKGLLGADAPTSTSSVLQAGLRSLQ 1624
Rat 1625 DLGPEIRQALTYDTEEEEEEEEAAGQEAEEEEAENN 1660 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
Cacna1f | NP_446153.2 | Ion_trans | 91..383 | CDD:395416 | 83/318 (26%) |
Ion_trans | 532..763 | CDD:395416 | 73/256 (29%) | ||
Ion_trans | 869..1106 | CDD:395416 | 88/242 (36%) | ||
Ion_trans | 1188..1451 | CDD:395416 | 85/269 (32%) | ||
GPHH | 1460..1513 | CDD:407139 | 12/52 (23%) | ||
Ca_chan_IQ | 1524..1595 | CDD:400901 | 17/78 (22%) | ||
CAC1F_C | 1618..1977 | CDD:407123 | 6/43 (14%) | ||
para | NP_001259619.1 | Ion_trans | 165..436 | CDD:278921 | 78/301 (26%) |
Na_trans_cytopl | 515..648 | CDD:288761 | 11/138 (8%) | ||
Ion_trans | 835..1028 | CDD:278921 | 58/205 (28%) | ||
Na_trans_assoc | 1054..1296 | CDD:284034 | 37/244 (15%) | ||
Ion_trans | 1318..1571 | CDD:278921 | 96/265 (36%) | ||
Na_channel_gate | 1561..1613 | CDD:240441 | 12/55 (22%) | ||
Ion_trans | 1636..1871 | CDD:278921 | 80/250 (32%) | ||
GPHH | 1880..1930 | CDD:293510 | 13/54 (24%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 1 | 0.900 | - | - | E1_KOG2301 | |
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 1 | 1.000 | - | - | ||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
3 | 2.810 |