DRSC/TRiP Functional Genomics Resources

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Protein Alignment Chrne and nAChRbeta1

DIOPT Version :9

Sequence 1:XP_006532069.1 Gene:Chrne / 11448 MGIID:87894 Length:494 Species:Mus musculus
Sequence 2:NP_523927.2 Gene:nAChRbeta1 / 38545 FlyBaseID:FBgn0000038 Length:521 Species:Drosophila melanogaster


Alignment Length:520 Identity:171/520 - (32%)
Similarity:274/520 - (52%) Gaps:60/520 - (11%)


- Green bases have known domain annotations that are detailed below.


Mouse     5 LLGALLLLTLFGRSQGKNEELSLYHHLFDNYDPECRPVRRPEDTVTITLKVTLTNLISLNEKEET 69
            ||.::|:|..|.......:|..|...||..|:...|||:.....|.:...:....||::|||.:.
  Fly     9 LLCSILVLVAFSLVSASEDEERLVRDLFRGYNKLIRPVQNMTQKVGVRFGLAFVQLINVNEKNQI 73

Mouse    70 LTTSVWIGIDWHDYRLNYSKDDFAGVGILRVPSEHVWLPEIVLENNIDGQFGVAYDSNVLVYEGG 134
            :.::||:.:.|:||:|.:.:.|:.|:|:||:|.:.||.|:|||.||.||.:.|.|.||||:|..|
  Fly    74 MKSNVWLRLVWYDYQLQWDEADYGGIGVLRLPPDKVWKPDIVLFNNADGNYEVRYKSNVLIYPTG 138

Mouse   135 YVSWLPPAIYRSTCAVEVTYFPFDWQNCSLIFRSQTYNAEEVEFIFAVDDDGNTINKIDIDTAAF 199
            .|.|:|||||:|:|.::|||||||.|.|.:.|.|.|:|.::|....       ..||..:|.:.:
  Fly   139 EVLWVPPAIYQSSCTIDVTYFPFDQQTCIMKFGSWTFNGDQVSLAL-------YNNKNFVDLSDY 196

Mouse   200 TENGEWAIDYCPGMIRRYEGGSTEGPGETDVIYTLIIRRKPLFYVINIIVPCVLISGLVLLAYFL 264
            .::|.|.|...|..:..|||.|.. |.|||:.:.:|||||.|||.:|:|:|.||||.|.:|.::|
  Fly   197 WKSGTWDIIEVPAYLNVYEGDSNH-PTETDITFYIIIRRKTLFYTVNLILPTVLISFLCVLVFYL 260

Mouse   265 PAQAGGQKCTVSINVLLAQTVFLFLIAQKIPETSLSVPLLGRYLIFVMVVATLIVMNCVIVLNVS 329
            ||:| |:|.|:.|::||:..|||.|:::.:|.|||.:||:.:||:|..::.|:.::..||::|.:
  Fly   261 PAEA-GEKVTLGISILLSLVVFLLLVSKILPPTSLVLPLIAKYLLFTFIMNTVSILVTVIIINWN 324

Mouse   330 LRTPTTHATSPRLRQILLELLPRLL-----------------GSSPPPE-DPRTASPA---RRAS 373
            .|.|.||.....:|.|.|..||..|                 |.|.|.. .|...|||   :..|
  Fly   325 FRGPRTHRMPMYIRSIFLHYLPAFLFMKRPRKTRLRWMMEMPGMSMPAHPHPSYGSPAELPKHIS 389

Mouse   374 SVGILLRAEELI----LKKPRSEL-----------VFEGQRHRHGTWTAAALCQNLGAAAPEIRC 423
            ::|......|::    |..|..::           :.:|.|....:..:..|       :||...
  Fly   390 AIGGKQSKMEVMELSDLHHPNCKINRKVNSGGELGLGDGCRRESESSDSILL-------SPEASK 447

Mouse   424 CVDAVNFVAESTRDQEATGEELSDWVRMGKALDNVCFWAALVLFSVGSTLIFLGGYFNQVPDLPY 488
            ..:||.|:||..|:::...:...||..:...:|.:..:...::.:.|:..|.:        |.|:
  Fly   448 ATEAVEFIAEHLRNEDLYIQTREDWKYVAMVIDRLQLYIFFIVTTAGTVGILM--------DAPH 504

Mouse   489  488
              Fly   505  504

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ChrneXP_006532069.1 LGIC_ECD_nAChR_E 49..239 CDD:349831 77/189 (41%)
Neur_chan_memb 247..474 CDD:367256 72/262 (27%)
nAChRbeta1NP_523927.2 LIC 8..500 CDD:273305 169/506 (33%)
Neur_chan_LBD 28..236 CDD:280998 86/215 (40%)
Neur_chan_memb 243..498 CDD:280999 72/262 (27%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3645
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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