DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Chrnb2 and nAChRbeta1

DIOPT Version :9

Sequence 1:NP_033732.2 Gene:Chrnb2 / 11444 MGIID:87891 Length:501 Species:Mus musculus
Sequence 2:NP_523927.2 Gene:nAChRbeta1 / 38545 FlyBaseID:FBgn0000038 Length:521 Species:Drosophila melanogaster


Alignment Length:516 Identity:216/516 - (41%)
Similarity:299/516 - (57%) Gaps:71/516 - (13%)


- Green bases have known domain annotations that are detailed below.


Mouse     7 SMALLFSFGLLWLCSGVLGTDTEERLVEHLLDPSRYNKLIRPATNGSELVTVQLMVSLAQLISVH 71
            |:.:|.:|.|      |..::.|||||..|.  ..|||||||..|.::.|.|:..::..|||:|:
  Fly    12 SILVLVAFSL------VSASEDEERLVRDLF--RGYNKLIRPVQNMTQKVGVRFGLAFVQLINVN 68

Mouse    72 EREQIMTTNVWLTQEWEDYRLTWKPEDFDNMKKVRLPSKHIWLPDVVLYNNADGMYEVSFYSNAV 136
            |:.|||.:||||...|.||:|.|...|:..:..:|||...:|.||:||:|||||.|||.:.||.:
  Fly    69 EKNQIMKSNVWLRLVWYDYQLQWDEADYGGIGVLRLPPDKVWKPDIVLFNNADGNYEVRYKSNVL 133

Mouse   137 VSYDGSIFWLPPAIYKSACKIEVKHFPFDQQNCTMKFRSWTYDRTEIDLVL--KSDVASLDDFTP 199
            :...|.:.|:|||||:|:|.|:|.:||||||.|.|||.|||::..::.|.|  ..:...|.|:..
  Fly   134 IYPTGEVLWVPPAIYQSSCTIDVTYFPFDQQTCIMKFGSWTFNGDQVSLALYNNKNFVDLSDYWK 198

Mouse   200 SGEWDIIALPGRRNENPDDS---TYVDITYDFIIRRKPLFYTINLIIPCVLITSLAILVFYLPSD 261
            ||.||||.:|...|....||   |..|||:..|||||.||||:|||:|.|||:.|.:||||||::
  Fly   199 SGTWDIIEVPAYLNVYEGDSNHPTETDITFYIIIRRKTLFYTVNLILPTVLISFLCVLVFYLPAE 263

Mouse   262 CGEKMTLCISVLLALTVFLLLISKIVPPTSLDVPLVGKYLMFTMVLVTFSIVTSVCVLNVHHRSP 326
            .|||:||.||:||:|.|||||:|||:|||||.:||:.|||:||.::.|.||:.:|.::|.:.|.|
  Fly   264 AGEKVTLGISILLSLVVFLLLVSKILPPTSLVLPLIAKYLLFTFIMNTVSILVTVIIINWNFRGP 328

Mouse   327 TTHTMAPWVKVVFLEKLPTLLFLQQPRHRCARQRLRLRRRQREREGAGTLFFREGPA----ADPC 387
            .||.|..:::.:||..||..||:::||      :.|||            :..|.|.    |.|.
  Fly   329 RTHRMPMYIRSIFLHYLPAFLFMKRPR------KTRLR------------WMMEMPGMSMPAHPH 375

Mouse   388 TCFVNPASMQ---GLAGAFQAEPAAAGLGRSMGPCSC----------------GLR--------- 424
            ..:.:||.:.   ...|..|::.....|.....| :|                |.|         
  Fly   376 PSYGSPAELPKHISAIGGKQSKMEVMELSDLHHP-NCKINRKVNSGGELGLGDGCRRESESSDSI 439

Mouse   425 -------EAVDGVRFIADHMRSEDDDQSVREDWKYVAMVIDRLFLWIFVFVCVFGTIGMFL 478
                   :|.:.|.|||:|:|:||.....||||||||||||||.|:||..|...||:|:.:
  Fly   440 LLSPEASKATEAVEFIAEHLRNEDLYIQTREDWKYVAMVIDRLQLYIFFIVTTAGTVGILM 500

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Chrnb2NP_033732.2 LIC 29..478 CDD:273305 211/492 (43%)
Neur_chan_LBD 29..234 CDD:280998 98/209 (47%)
Neur_chan_memb 241..477 CDD:280999 107/274 (39%)
nAChRbeta1NP_523927.2 LIC 8..500 CDD:273305 216/514 (42%)
Neur_chan_LBD 28..236 CDD:280998 98/209 (47%)
Neur_chan_memb 243..498 CDD:280999 106/273 (39%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3645
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D188416at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
54.780

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