DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CHRNB2 and NtR

DIOPT Version :10

Sequence 1:NP_000739.1 Gene:CHRNB2 / 1141 HGNCID:1962 Length:502 Species:Homo sapiens
Sequence 2:NP_651958.2 Gene:NtR / 43935 FlyBaseID:FBgn0029147 Length:585 Species:Drosophila melanogaster


Alignment Length:129 Identity:24/129 - (18%)
Similarity:45/129 - (34%) Gaps:44/129 - (34%)


- Green bases have known domain annotations that are detailed below.


Human    40 PNSMEDLFLPQDVAELLEGPEE------------------------ALQVSAPAAQEPGTEAPAP 80
            ||.::::|  ..:.:|...|||                        ||::|:.|.:.  |.|||.
  Fly    21 PNGLDEMF--HSITDLKVQPEEYLCVPCYDDLKVAYRFKQRCIQNTALRLSSRAKKT--THAPAD 81

Human    81 ---VAPASATPWPLSSSVPSQKTYQGNYGFHLGFLQSGTAKSVMCTYSISLNKLFCQLAKTCPV 141
               ::..:.......:|||...            :...|.|: .|....|.:.|..:::...|:
  Fly    82 QSFISSCTDVYTTYDNSVPEST------------INQNTEKN-SCNGRASTSNLAPEMSDPSPL 132

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CHRNB2NP_000739.1 LIC 29..479 CDD:455710 24/129 (19%)
LGIC_ECD_nAChR_B2 31..234 CDD:349826 24/129 (19%)
Cys-loop 155..169 CDD:349826
NtRNP_651958.2 Methyltransf_FA 89..191 CDD:463505 9/57 (16%)
Neur_chan_LBD 212..429 CDD:460752
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.