Sequence 1: | NP_000739.1 | Gene: | CHRNB2 / 1141 | HGNCID: | 1962 | Length: | 502 | Species: | Homo sapiens |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_524482.1 | Gene: | nAChRalpha2 / 42919 | FlyBaseID: | FBgn0000039 | Length: | 576 | Species: | Drosophila melanogaster |
Alignment Length: | 540 | Identity: | 225/540 - (41%) |
---|---|---|---|
Similarity: | 320/540 - (59%) | Gaps: | 88/540 - (16%) |
- Green bases have known domain annotations that are detailed below.
Human 3 RRCGPVALLLGFGLLRLCSGVWGTDTEERLVEHLLDPSRYNKLIRPATNGSELVTVQLMVSLAQL 67
Human 68 ISVHEREQIMTTNVWLTQEWEDYRLTWKPEEFDNMKKVRLPSKHIWLPDVVLYNNADGMYEVSFY 132
Human 133 SNAVVSYDGSIFWLPPAIYKSACKIEVKHFPFDQQNCTMKFRSWTYDRTEIDLV---------LK 188
Human 189 SEVA-SLDDFTPSGEWDIVALPGRRNE-------NPDDSTYVDITYDFIIRRKPLFYTINLIIPC 245
Human 246 VLITSLAILVFYLPSDCGEKMTLCISVLLALTVFLLLISKIVPPTSLDVPLVGKYLMFTMVLVTF 310
Human 311 SIVTSVCVLNVHHRSPTTHTMAPWVKVVFLEKLPALLFMQQPR---HHCARQRLRL--------- 363
Human 364 -------------------RRRQREREGAGALFFREAPGADS--CTCFVNRASVQGLAGAFGAEP 407
Human 408 APVAGPGRSGEPCGCG------------------LREAVDGVRFIADHMRSEDDDQSVSEDWKYV 454
Human 455 AMVIDRLFLWIFVFVCVFGT 474 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
CHRNB2 | NP_000739.1 | LIC | 29..479 | CDD:273305 | 214/514 (42%) |
LGIC_ECD_nAChR_B2 | 31..234 | CDD:349826 | 100/219 (46%) | ||
Cys-loop | 155..169 | CDD:349826 | 9/13 (69%) | ||
nAChRalpha2 | NP_524482.1 | LGIC_ECD_nAChR_proto_alpha-like | 44..263 | CDD:349832 | 101/224 (45%) |
LIC | 47..544 | CDD:273305 | 214/512 (42%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 1 | 0.900 | - | - | E1_KOG3645 | |
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
Isobase | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 1 | 1.010 | - | - | D188416at33208 | |
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 1 | 1.000 | - | - | mtm8639 | |
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
User_Submission | 0 | 0.000 | Not matched by this tool. | |||
4 | 3.820 |