Sequence 1: | NP_000739.1 | Gene: | CHRNB2 / 1141 | HGNCID: | 1962 | Length: | 502 | Species: | Homo sapiens |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_523927.2 | Gene: | nAChRbeta1 / 38545 | FlyBaseID: | FBgn0000038 | Length: | 521 | Species: | Drosophila melanogaster |
Alignment Length: | 515 | Identity: | 215/515 - (41%) |
---|---|---|---|
Similarity: | 296/515 - (57%) | Gaps: | 70/515 - (13%) |
- Green bases have known domain annotations that are detailed below.
Human 8 VALLLGFGLLRLCSGVWGTDTEERLVEHLLDPSRYNKLIRPATNGSELVTVQLMVSLAQLISVHE 72
Human 73 REQIMTTNVWLTQEWEDYRLTWKPEEFDNMKKVRLPSKHIWLPDVVLYNNADGMYEVSFYSNAVV 137
Human 138 SYDGSIFWLPPAIYKSACKIEVKHFPFDQQNCTMKFRSWTYDRTEIDLVL--KSEVASLDDFTPS 200
Human 201 GEWDIVALPGRRNENPDDS---TYVDITYDFIIRRKPLFYTINLIIPCVLITSLAILVFYLPSDC 262
Human 263 GEKMTLCISVLLALTVFLLLISKIVPPTSLDVPLVGKYLMFTMVLVTFSIVTSVCVLNVHHRSPT 327
Human 328 THTMAPWVKVVFLEKLPALLFMQQPRHHCARQRLRLRRRQREREGAGALFFREAPG----ADSCT 388
Human 389 CFVNRASVQGLAGAFGAEPA-------------------PVAGPGRSGEPCGCGLRE-------- 426
Human 427 -------AVDGVRFIADHMRSEDDDQSVSEDWKYVAMVIDRLFLWIFVFVCVFGTIGMFL 479 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
CHRNB2 | NP_000739.1 | LIC | 29..479 | CDD:273305 | 211/492 (43%) |
LGIC_ECD_nAChR_B2 | 31..234 | CDD:349826 | 94/207 (45%) | ||
Cys-loop | 155..169 | CDD:349826 | 9/13 (69%) | ||
nAChRbeta1 | NP_523927.2 | LIC | 8..500 | CDD:273305 | 215/513 (42%) |
Neur_chan_LBD | 28..236 | CDD:280998 | 96/209 (46%) | ||
Neur_chan_memb | 243..498 | CDD:280999 | 108/273 (40%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 1 | 0.900 | - | - | E1_KOG3645 | |
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
Isobase | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 1 | 1.010 | - | - | D188416at33208 | |
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 1 | 0.960 | - | - | ||
User_Submission | 0 | 0.000 | Not matched by this tool. | |||
4 | 3.780 |