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Protein Alignment Chia and Cht10

DIOPT Version :9

Sequence 1:	NP_997469.1	Gene:	Chia / 113901	RGDID:	1303058	Length:	473	Species:	Rattus norvegicus
Sequence 2:	NP_001036422.1	Gene:	Cht10 / 3355116	FlyBaseID:	FBgn0250907	Length:	2286	Species:	Drosophila melanogaster

Alignment Length:	485	Identity:	180/485 - (37%)
Similarity:	251/485 - (51%)	Gaps:	61/485 - (12%)

- Green bases have known domain annotations that are detailed below.

  Rat    20 SAYNLVCYFTNWAQYRPGLGSFKPDDINPCLCTHLIYAFAGMQNNQI---TTIEWNDV--TLYKA 79
            |.|.::|||||||.||.|:|.|.|||||..||||:||.||.:..:::   |...|.||  ..|..
  Fly   963 SHYKVICYFTNWAWYRKGIGRFTPDDINTELCTHVIYGFAVLDYSELVLRTHDSWADVENNFYTR 1027

  Rat    80 FNDLKNRNSKLKTLLAIGGWNFGTA-PFTTMVSTSQNRQTFITSVIKFLRQYGFDGLDLDWEYP- 142
            ...||::.  :|..||:||||.... .::.:|.:...|..|:...::|:.:|||:|||||||||
  Fly  1028 VTSLKSKG--IKVSLALGGWNDSQGDKYSRLVRSPMARSRFVRHALEFIEKYGFEGLDLDWEYPV 1090

  Rat   143 -----GSRGSPPQDKHLFTVLVKELREAFEQEAIESNRPR-LMVTAAVAAGISNIQAGYEIPELS 201
                 .::|| .::|..||..|:||.|||        ||| ||::.||:.....|.|||:||:||
  Fly  1091 CWQTECNKGS-TEEKDGFTAWVQELSEAF--------RPRGLMLSTAVSPSRKIIDAGYDIPQLS 1146

  Rat   202 QYLDFIHVMTYDLHGSWDGYTGENSPLYKLPTETGSNAYLNVDYVMNYWKDNGAPAEKLIVGFPE 266
            :|.|:|.|||||.||.||..||..:|||..|.:  ...|.||:|.:|||.:.|||::||::|.|.
  Fly  1147 RYFDWIAVMTYDFHGHWDKKTGHVAPLYHHPDD--DFEYFNVNYSINYWMEKGAPSQKLVMGIPL 1209

  Rat   267 YGHTYILSNPSDTGIGAPTSGNGPAGPYTRQAGFWAYYEICTFLRNGATQDWDAPQEV-----PY 326
            ||.::.|.|.:.:|:.|.....|.||.:||.|||.||||||..:..   |.|....:.     ||
  Fly  1210 YGQSFTLENTNSSGLNAKAPAPGEAGEFTRAAGFLAYYEICERVNR---QGWQVVHDEFGRMGPY 1271

  Rat   327 AYKGNEWVGYDNIKSFSVKAQWLKQNNFGGAMIWAIDLDDFTGSFCDQGKFPLTSTLNKALDIPT 391
            ||||.:||.||:......|:..::....||.|:||:|||||... |..|..||.:.::..|..|.
  Fly  1272 AYKGTQWVSYDSPDMVRKKSLLVRSLKLGGGMVWALDLDDFKNR-CGNGVHPLLTEIHNVLKDPP 1335

  Rat   392 AGCTAPDLPSEPVTTPPGSGSGGGSSGGGSEGSG-----------FCAGKADGLYPVADDRNAFW 445
            :....|.    |:.|.|....|.......|.|.|           .|..:.:....:.|.
  Fly  1336 SLMEIPG----PIETTPTEYPGMEEEIHESNGEGPEVQPIEAVMQTCENEGEEHEGILDP----- 1391

  Rat   446 HCINGITYQQHCQA---GLVFDTSCNCCNW 472
               |.:..:::.:|   ...|...|...||
  Fly  1392 ---NHVLEEENIEATEMATEFKIICYFTNW 1418

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.