Sequence 1: | NP_000735.1 | Gene: | CHRNA4 / 1137 | HGNCID: | 1958 | Length: | 627 | Species: | Homo sapiens |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_523927.2 | Gene: | nAChRbeta1 / 38545 | FlyBaseID: | FBgn0000038 | Length: | 521 | Species: | Drosophila melanogaster |
Alignment Length: | 622 | Identity: | 244/622 - (39%) |
---|---|---|---|
Similarity: | 341/622 - (54%) | Gaps: | 143/622 - (22%) |
- Green bases have known domain annotations that are detailed below.
Human 11 LLPPLLLLLGTGLLRASSHVETRAHAEERLLKKLFSGYNKWSRPVANISDVVLVRFGLSIAQLID 75
Human 76 VDEKNQMMTTNVWVKQEWHDYKLRWDPADYENVTSIRIPSELIWRPDIVLYNNADGDFAVTHLTK 140
Human 141 AHLFHDGRVQWTPPAIYKSSCSIDVTFFPFDQQNCTMKFGSWTY--DKAKIDLVNMHSRVDQLDF 203
Human 204 WESGEWVIVDAVGTYNTRKYECCAEIYPDITYAFVIRRLPLFYTINLIIPCLLISCLTVLVFYLP 268
Human 269 SECGEKITLCISVLLSLTVFLLLITEIIPSTSLVIPLIGEYLLFTMIFVTLSIVITVFVLNVHHR 333
Human 334 SPRTHTMPTWVRRVFLDIVPRLLLMKRPSVVKDNCRRLIESMHKMASAPRFWPEPEGEPPATSGT 398
Human 399 QSLHPPSPSFCVP-LDVPAEPGPSCKSPSDQLP--------PQQPLEAEKASP--HPSPGPCRPP 452
Human 453 HGTQAPGLAKARSLSVQHMSSPGEAVEGGVRCRSRSIQYCVPRDDAAPEADGQAAGALASRNTHS 517
Human 518 AELPPPDQPSPCKCTCKKEPSSVSPSATVKTRSTKAPPPHLPLSPALTRAVEGVQYIADHLKAED 582
Human 583 TDFSVKEDWKYVAMVIDRIFLWMFIIVCLLGTVGLFL 619 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
CHRNA4 | NP_000735.1 | Neur_chan_LBD | 37..243 | CDD:280998 | 102/207 (49%) |
Neur_chan_memb | 250..618 | CDD:280999 | 130/378 (34%) | ||
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 382..481 | 19/109 (17%) | |||
Ten_N | <423..>572 | CDD:284015 | 26/158 (16%) | ||
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 496..561 | 7/64 (11%) | |||
nAChRbeta1 | NP_523927.2 | LIC | 8..500 | CDD:273305 | 244/620 (39%) |
Neur_chan_LBD | 28..236 | CDD:280998 | 102/207 (49%) | ||
Neur_chan_memb | 243..498 | CDD:280999 | 129/377 (34%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 1 | 0.900 | - | - | E1_KOG3645 | |
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 1 | 1.000 | - | - | H592 | |
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
Isobase | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 1 | 1.010 | - | - | D188416at33208 | |
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
User_Submission | 0 | 0.000 | Not matched by this tool. | |||
4 | 3.820 |