DRSC/TRiP Functional Genomics Resources

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Protein Alignment RNF13 and DMA1

DIOPT Version :9

Sequence 1:NP_001365214.1 Gene:RNF13 / 11342 HGNCID:10057 Length:381 Species:Homo sapiens
Sequence 2:NP_011983.1 Gene:DMA1 / 856515 SGDID:S000001157 Length:416 Species:Saccharomyces cerevisiae


Alignment Length:151 Identity:34/151 - (22%)
Similarity:60/151 - (39%) Gaps:48/151 - (31%)


- Green bases have known domain annotations that are detailed below.


Human   212 RARRNRLRKDQLKKLP-VHKFKKGDEYDVCAICLDEYEDGDKLRILPCSHAYHCKCVDPW--LTK 273
            :.:.|...|:.|.::. :.|...|.|.:.|:|||::.:....:.|.||:|::|..||...  :..
Yeast   298 KLKANAFNKEALSRIKNLQKLTTGLEQEDCSICLNKIKPCQAIFISPCAHSWHFHCVRRLVIMNY 362

Human   274 TKKTCPVCKQKVVPSQGDSDSDTDSSQEENEVTEHTPLLRPLASVSAQSFGALSESRSHQNMTES 338
            .:..||.|:         ::.|.:::.|                         |||.|       
Yeast   363 PQFMCPNCR---------TNCDLETTLE-------------------------SESES------- 386

Human   339 SDYEEDDNEDTDSSDAENEIN 359
                |.:|||.|..|.|.:|:
Yeast   387 ----EFENEDEDEPDIEMDID 403

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RNF13NP_001365214.1 PA_C_RZF_like 23..180 CDD:239038
RING-H2_RNF167 238..283 CDD:319711 14/46 (30%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 285..381 14/75 (19%)
DMA1NP_011983.1 FHA 121..308 CDD:224630 2/9 (22%)
RING-H2_Dmap_like 325..371 CDD:319372 13/45 (29%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X670
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.000

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