DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Abca1 and Eato

DIOPT Version :9

Sequence 1:XP_006537617.1 Gene:Abca1 / 11303 MGIID:99607 Length:2263 Species:Mus musculus
Sequence 2:NP_001036360.1 Gene:Eato / 34783 FlyBaseID:FBgn0028539 Length:1597 Species:Drosophila melanogaster


Alignment Length:1882 Identity:477/1882 - (25%)
Similarity:803/1882 - (42%) Gaps:452/1882 - (24%)


- Green bases have known domain annotations that are detailed below.


Mouse   456 LDWTAQDIM----AFLAKNP---EDVQSPNGSV-YTWREAFNETNQAIQTISRFMECVNLNKLEP 512
            |.|:.:.::    .|.|||.   .::..|...: |.:....:...:.|..:.|.       .|..
  Fly    42 LHWSVKPVLHQINQFEAKNEMVLRELYFPGNELDYIYYSPISPNVEDIMDLLRV-------DLGI 99

Mouse   513 IPTEVRLINKSMEL-LDERKFWAGIVFTGITPDSVELPHH-----VKYKI---RMDIDNVERTNK 568
            ||..:|..|.|.|: |:..:...|..|   ..|...:|:.     .:|.:   :|.|...:|...
  Fly   100 IPERLRPNNNSFEMQLEMEQQCRGSCF---AIDFHRVPNRGSDRKFRYSLSSNQMRISPRKRFVN 161

Mouse   569 IKDGYWDPGPRADPFEDMRYVWGGFAYLQDVVEQAIIRVLTGSE--KKTGVYVQQMPYPCYVDDI 631
            .::.|       ...:|..|:..||..||.::::..::.   .|  |...|.|..||     :..
  Fly   162 DEEIY-------HQIDDDDYIRSGFLSLQHILDKQYMKY---QELGKDFEVVVSSMP-----NME 211

Mouse   632 FLRVMSRSMPLFMTLAWIYSVAVIIKSIVY----EKEARLKETMRI---MGLDNGILWFSWFVSS 689
            .:.:.|..:..|.||..|....|::.|.|.    ||:..|||.:.:   |...||:.:|      
  Fly   212 VISMDSHRLTYFGTLCSILFNVVLLSSFVVPFVEEKQNGLKEFLNLVTPMSFLNGLTFF------ 270

Mouse   690 LIPLLVSAGLLVVILKLGNLLPYSDPSVVFVFLSVFAMVTILQ----CFLISTLFSRANLAAACG 750
            ||..:....|::.:|.:..|.. :..|:.|.:::|..::.||.    .:|||..| .:...|..|
  Fly   271 LIRFVCYTLLMIFVLVVAYLYK-ALGSICFAYVAVLFLLYILSTMSYAYLISICF-HSVFYAKIG 333

Mouse   751 GIIYFTLYLPYVLCV--AWQD---YVGFSIKIFASLLSPVAFGFGCEYFALFEEQGIGVQWD--N 808
            |:.  .|.:||....  :|..   :|.||...|..         |.:.|..|..:....::.  :
  Fly   334 GLA--MLIIPYAFSFVRSWATSLAFVCFSTNTFLE---------GLDIFQTFSNKRKNREFGAVD 387

Mouse   809 LFESPVEEDGFNLTTAVSMMLFDTFLYGVMTWYIEAVFPGQYGIPRPWYFPCTKSYWFGEEIDEK 873
            :|. .::.:...:.:...:::|.:|||.::..|:..||||..|:.||.:|          .:|.|
  Fly   388 VFR-VIKSNSSTMFSVYVVLVFQSFLYAMLYNYLGCVFPGPGGLKRPMFF----------FLDPK 441

Mouse   874 SHPGSSQKGVSEICMEEEPTHLRLGVSIQNLVKVYRDGMK--VAVDGLALNFYEGQITSFLGHNG 936
            ::   .::..:|.......||   .:.|..|.|.::...:  :..|.|.:.....:||..|||||
  Fly   442 TY---MKRQRNEYTTTPRGTH---AIIITELCKKFQTSKRDTLISDNLNMTINNKEITVLLGHNG 500

Mouse   937 AGKTTTMSILTGLFPPTSGTAYILGKDIRSEMSSIRQNLGVCPQHNVLFDMLTVEEHIWFYARLK 1001
            |||||.|:::.||.|..||...:..:   .:::|.|..:|.||||:|....:|..:|:.|:|:|:
  Fly   501 AGKTTMMNMIMGLVPKDSGKIIVCSE---RDVASYRHLIGFCPQHSVFMSYMTCHQHLEFFAQLR 562

Mouse  1002 GLSEKHVKAEMEQMALDVGLPPSKLKSKTSQLSGGMQRKLSVALAFVGGSKVVILDEPTAGVDPY 1066
            |......:...::....:|| ..|.......|||||:|:||:.:|..|.:|:||||||::|:|..
  Fly   563 GACRSDARDWADEKLKKLGL-SDKRNEFGKNLSGGMKRRLSLGIAIAGNTKIVILDEPSSGLDIN 626

Mouse  1067 SRRGIWELLLKYRQGRTIILSTHHMDEADILGDRIAIISHGKLCCVGSSLFLKNQLGTGYYLTLV 1131
            |||.:|::||..|:.:.::::||:|:||::|||.|.|:::|||..:||.|.||.:.|.||.|.|.
  Fly   627 SRRELWDILLNLRKEKAVLVTTHYMEEAEVLGDTICILANGKLQSIGSPLELKRKSGIGYRLKLE 691

Mouse  1132 KKDVESSLSSCRNSSSTVSCLKKVVPGLPAAGQSGGRGGEVQRLVALTQDVSAISNLIRKHVSEA 1196
            ..|..|.                                ||:           |..:|...|..|
  Fly   692 INDFTSR--------------------------------EVE-----------IMEIIHHFVPTA 713

Mouse  1197 RLVEDIGHELTYVLPYEAAKEGAFVELFHEIDDRLSDLGISSYGISETTLEEIFLKVA-EESGVD 1260
            |::..:...:...|||  |.:..|.::.:.::....:|||.:..:::|:||::||:.| |:..||
  Fly   714 RVLNVVNPTVYICLPY--AYKNCFAQMLYRLETESKELGIHTISMTDTSLEDVFLRCAGEQDQVD 776

Mouse  1261 AETSDGT---LPARRNRRAFGDKQSCLHPFTEDDAVDPNDSDIDPESRETDLLSGMDGKGSYQLK 1322
              |.||:   .|...:.:...|     ||        |:                   :|.:|| 
  Fly   777 --TPDGSRNDAPLLAHYKRLQD-----HP--------PH-------------------RGLFQL- 806

Mouse  1323 GWKLTQQQFVALLWKRLLIARRSRKGFFAQIVLPAVFVCIALVFSLIVPPFGKYPSLELQPWMYN 1387
             |       :|:.:|:....  |.:..:..|:|...|||:          ||....:.....:.|
  Fly   807 -W-------MAVFYKKWTFI--SNEWLYTLIMLCIPFVCV----------FGAILVMHAMSLVEN 851

Mouse  1388 EQYTFVSNDAPEDMGTQELLNALTKDPGFGTRCMEGNPIPDTPCLAGEEDWTISPVPQSIVDLFQ 1452
            |                                 |..|:                          
  Fly   852 E---------------------------------EALPL-------------------------- 857

Mouse  1453 NGNWTMKNPSPACQCSSDKIKKMLPVCPPGAGGLPPPQRKQKTADILQNLTGRNISDYLVKTYVQ 1517
                              |:.:|      |:|.:           .:.|.||.:..         
  Fly   858 ------------------KLSQM------GSGVI-----------YVHNPTGHHAH--------- 878

Mouse  1518 IIAKSLKNKIWVNEFRYGGFSLGV-SNSQALPPSHEVNDAIKQMKKLLKLTKDSSADRFLSSL-- 1579
             :.:.|:.:|.:|         |: :.:..|..|::|.:      :.|.|.:|:.|| ||..:  
  Fly   879 -LEQQLRQQIELN---------GITAKTMHLRGSNDVKN------ESLDLQRDNLAD-FLEQVIG 926

Mouse  1580 -------GRFMAGLDTKNNVKVWFNNKGWHAISSFLNVINNAILRANLQKGENPSQYGITAFNHP 1637
                   ||   |......::::::...:|:....:|::::|:|:....:.|..:.| :......
  Fly   927 IIDMYGGGR---GTSDTPTIEIFYSGNRYHSSVELINLVDSAMLKLGRPESEIDTTY-VPIRRFV 987

Mouse  1638 LNLTKQQLSEVALMTTSVDVLVSICVIFAMSFVPASFVVFLIQERVSKAKHLQFISGVKPVIYWL 1702
            .:::..:|...|       |:|.|.:.|.|.:    |:....:|..:..|.||.:|   ...||.
  Fly   988 SDISPSRLEYYA-------VIVPIGMFFFMFY----FISLPFREYANGFKQLQTMS---RFTYWF 1038

Mouse  1703 SNFVWDMCNYVVPATLVIIIFIC---FQQKSYV------SSTNLPVLALLLLLYGWSITPLMYPA 1758
            ::|.:||         :|:||:|   |..:|.:      ::..|.|:.|.:..||.|..|::|..
  Fly  1039 AHFTFDM---------LILIFVCVALFSLQSLMMPSELYTTAELKVIVLSIFFYGCSYLPILYAL 1094

Mouse  1759 SFVFKIPST--AYVVLTSVNLFIGINGSVATFVLELFTNN-----KLNDINDILKSVFLIF-PHF 1815
            ...||..||  .|::|.          .:.:.:..|.|::     ||::    .|..||.| |.|
  Fly  1095 GNNFKSISTISTYLLLM----------LIVSAIAPLITSSNAAAMKLHE----TKIAFLCFLPDF 1145

Mouse  1816 CLGRGLIDMVKNQAMADALERFGENRFVSPLSWDLVGRNLF---AMAVEGVVFFLITVLIQYRF- 1876
            .|         |.......|.|...|..: |...|:.::.|   |.||..:|....|::::::: 
  Fly  1146 NL---------NHQFRIINENFITRRHPA-LIKGLISQDTFFAYATAVGVMVMAFFTIVLEHKYL 1200

Mouse  1877 ------------FIRPR-PVKAKLP--PLNDEDEDVRRERQRILD--GGGQND-ILEIKELTKIY 1923
                        |.|.: .....||  |:::.| |..||.:|:.|  ....|| .|.:..|.|.|
  Fly  1201 RRRIHDGIWEWAFQRKKYNSTGTLPSTPISEID-DCAREEKRVTDLIKDPLNDHSLIVHNLRKRY 1264

Mouse  1924 RRKRKPAVDRICIGIPPGECFGLLGVNGAGKSTTFKMLTGDTPVTRGDAFLNKNSILSNIHEVHQ 1988
            ..|.  |||.:......||||||||||||||::||:|:..:.|:..|...:....|..:..:..:
  Fly  1265 GDKL--AVDGVSFAAAQGECFGLLGVNGAGKTSTFQMIAANLPLDGGTIRIKGADIREHELKYRE 1327

Mouse  1989 NMGYCPQFDAITELLTGREHVEFFALLRGVPEKEVG-------KVGEWAIRKLGLVKYGEKYASN 2046
            ..|||||:||:.:.:|..:.:.:.|||||:..:...       .|..| :.|:.|.||.:....:
  Fly  1328 YFGYCPQYDALNKFMTAEQCLYYMALLRGLSRRRTDGPASCKEHVKYW-LEKMHLTKYQKVQVRH 1391

Mouse  2047 YSGGNKRKLSTAMALIGGPPVVFLDEPTTGMDPKARRFLWNCALSIVKEGRSVVLTSHSMEECEA 2111
            ||||.||||..|||:||.|.:|.|||||||:||.:|||||.|......:.|:||||||||:|||.
  Fly  1392 YSGGTKRKLLAAMAMIGAPALVLLDEPTTGVDPISRRFLWQCIKDFQGKDRTVVLTSHSMDECEE 1456

Mouse  2112 LCTRMAIMVNGRFRCLGSVQHLKNRFGDGYTIVVRIAGSNPDLKPVQEFFGL---AFPGSVLKEK 2173
            ||.|:|||.:|:|:||.::..||..  .|:||.:::.........|....|.   .|||..|:|.
  Fly  1457 LCNRLAIMAHGKFKCLNNICALKRL--SGFTIKLKMKADTETEMNVSTITGTLKSEFPGLELRES 1519

Mouse  2174 HRNMLQYQLPSSLSSL--ARIFSILSQ---SKKRLHIEDYSVSQTTLDQVFVNF---AKDQS 2227
            |...|.|.:.:..|.:  :.:|.|..:   .:....:.||||::.||:.:|:.|   ||.||
  Fly  1520 HAGTLTYFVSTQESVVLWSSVFKIAEEYLGDRLSALVADYSVNECTLEDIFLKFEREAKSQS 1581

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Abca1XP_006537617.1 rim_protein 6..2238 CDD:130324 477/1882 (25%)
EatoNP_001036360.1 ABC2_membrane_3 <209..347 CDD:289468 37/147 (25%)
CcmA 460..767 CDD:224054 110/355 (31%)
ABC_subfamily_A 461..679 CDD:213230 82/221 (37%)
ABC2_membrane_3 <937..1117 CDD:289468 44/213 (21%)
ABC_subfamily_A 1255..1479 CDD:213230 99/226 (44%)
drrA 1262..1573 CDD:130256 122/315 (39%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167838496
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0059
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG53524
OrthoDB 1 1.010 - - D131191at2759
OrthoFinder 1 1.000 - - FOG0000051
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100045
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
76.660

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