DRSC/TRiP Functional Genomics Resources

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Protein Alignment CHRM1 and Octbeta2R

DIOPT Version :10

Sequence 1:NP_000729.2 Gene:CHRM1 / 1128 HGNCID:1950 Length:460 Species:Homo sapiens
Sequence 2:NP_001163596.2 Gene:Octbeta2R / 41549 FlyBaseID:FBgn0038063 Length:630 Species:Drosophila melanogaster


Alignment Length:437 Identity:121/437 - (27%)
Similarity:187/437 - (42%) Gaps:123/437 - (28%)


- Green bases have known domain annotations that are detailed below.


Human    26 AFIGITTGLLSLATVTGNLLVLISFKVNTELKTVNNYFLLSLACADLIIGTFSMNLYTTYLLMGH 90
            ||:.:   |:.:|.:.|||||:||.....:|:.:.|||::|||.||:::...:|....:..:.|.
  Fly   157 AFVML---LIIIAAICGNLLVIISVMRVRKLRVITNYFVVSLAMADIMVAIMAMTFNFSVQVTGR 218

Human    91 WALGTLACDLWLALDYVASNASVMNLLLISFDRYFSVTRPLSYRAKRTPRRAALMIGLAW----L 151
            |......||||.:||...|.||:::|..||.|||:::.:||.|....|.|...:|:...|    |
  Fly   219 WNFSPFLCDLWNSLDVYFSTASILHLCCISVDRYYAIVKPLKYPISMTKRVVGIMLLNTWISPAL 283

Human   152 VSFVLWAPAILFW-------QYLVGERTVLAGQC------YIQFLSQPIITFGTAMAAFYLPVTV 203
            :||:   |..:.|       |:::...|    ||      |...:|..|        :|::|.|:
  Fly   284 LSFL---PIFIGWYTTPQHQQFVIQNPT----QCSFVVNKYYAVISSSI--------SFWIPCTI 333

Human   204 MCTLYWRIYRETENRARELAALQGSETPGKGGGSSSSSERSQPGAEGSPETPPGRCCRCCRAPRL 268
            |...|..|:||...:.::|....|           ::....:|..:.|.|...|           
  Fly   334 MIFTYLAIFREANRQEKQLMMRHG-----------NAMLMHRPSMQPSGEALSG----------- 376

Human   269 LQAYSWKEEEEEDEGSMESLTSSEGEEPGSEVVIKMPMVDPEAQAPTKQPPRSSPNTVKRPTKKG 333
                         .||.::||..|.|               :...|||.                
  Fly   377 -------------SGSSKTLTLHEVE---------------QEHTPTKD---------------- 397

Human   334 RDRAGKGQKPRGKEQLAKRKTFSLVKEKKAARTLSAILLAFILTWTPYNIMVLVSTFCKDC-VPE 397
                         :.|.|.|     :|.||||||..|:..|||.|.|:.:...:|..|::| ||:
  Fly   398 -------------KHLIKMK-----REHKAARTLGIIMGTFILCWLPFFLWYTLSMTCEECQVPD 444

Human   398 TLWELGYWLCYVNSTINPMCYALCNKAFRDTFR---LLLLCRWDKRR 441
            .:..:.:|:.|.|||:||:.||..|:.||:.||   |.|.|.|.|.|
  Fly   445 IVVSILFWIGYFNSTLNPLIYAYFNRDFREAFRNTLLCLFCNWWKDR 491

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CHRM1NP_000729.2 7tmA_mAChR_M1 26..429 CDD:341356 113/420 (27%)
TM helix 1 27..53 CDD:341356 10/25 (40%)
TM helix 2 60..86 CDD:341356 9/25 (36%)
TM helix 3 98..128 CDD:341356 15/29 (52%)
TM helix 4 140..163 CDD:341356 7/26 (27%)
TM helix 5 185..214 CDD:341356 7/28 (25%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 225..256 4/30 (13%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 274..297 6/22 (27%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 310..351 4/40 (10%)
TM helix 6 358..388 CDD:341356 13/29 (45%)
TM helix 7 397..422 CDD:341356 9/24 (38%)
Octbeta2RNP_001163596.2 7tmA_DmOct-betaAR-like 155..476 CDD:320194 113/420 (27%)
TM helix 1 155..181 CDD:320194 11/26 (42%)
TM helix 2 188..214 CDD:320194 9/25 (36%)
TM helix 3 226..256 CDD:320194 15/29 (52%)
TM helix 4 268..291 CDD:320194 7/25 (28%)
TM helix 5 315..344 CDD:320194 9/36 (25%)
TM helix 6 404..434 CDD:320194 14/34 (41%)
TM helix 7 444..469 CDD:320194 9/24 (38%)

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