DRSC/TRiP Functional Genomics Resources

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Protein Alignment CHRM1 and Chrm1

DIOPT Version :9

Sequence 1:NP_000729.2 Gene:CHRM1 / 1128 HGNCID:1950 Length:460 Species:Homo sapiens
Sequence 2:NP_001106167.1 Gene:Chrm1 / 12669 MGIID:88396 Length:460 Species:Mus musculus


Alignment Length:460 Identity:455/460 - (98%)
Similarity:458/460 - (99%) Gaps:0/460 - (0%)


- Green bases have known domain annotations that are detailed below.


Human     1 MNTSAPPAVSPNITVLAPGKGPWQVAFIGITTGLLSLATVTGNLLVLISFKVNTELKTVNNYFLL 65
            ||||.||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Mouse     1 MNTSVPPAVSPNITVLAPGKGPWQVAFIGITTGLLSLATVTGNLLVLISFKVNTELKTVNNYFLL 65

Human    66 SLACADLIIGTFSMNLYTTYLLMGHWALGTLACDLWLALDYVASNASVMNLLLISFDRYFSVTRP 130
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Mouse    66 SLACADLIIGTFSMNLYTTYLLMGHWALGTLACDLWLALDYVASNASVMNLLLISFDRYFSVTRP 130

Human   131 LSYRAKRTPRRAALMIGLAWLVSFVLWAPAILFWQYLVGERTVLAGQCYIQFLSQPIITFGTAMA 195
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Mouse   131 LSYRAKRTPRRAALMIGLAWLVSFVLWAPAILFWQYLVGERTVLAGQCYIQFLSQPIITFGTAMA 195

Human   196 AFYLPVTVMCTLYWRIYRETENRARELAALQGSETPGKGGGSSSSSERSQPGAEGSPETPPGRCC 260
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||:||||||
Mouse   196 AFYLPVTVMCTLYWRIYRETENRARELAALQGSETPGKGGGSSSSSERSQPGAEGSPESPPGRCC 260

Human   261 RCCRAPRLLQAYSWKEEEEEDEGSMESLTSSEGEEPGSEVVIKMPMVDPEAQAPTKQPPRSSPNT 325
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||:|||||
Mouse   261 RCCRAPRLLQAYSWKEEEEEDEGSMESLTSSEGEEPGSEVVIKMPMVDPEAQAPTKQPPKSSPNT 325

Human   326 VKRPTKKGRDRAGKGQKPRGKEQLAKRKTFSLVKEKKAARTLSAILLAFILTWTPYNIMVLVSTF 390
            |||||||||||.|||||||||||||||||||||||||||||||||||||||||||||||||||||
Mouse   326 VKRPTKKGRDRGGKGQKPRGKEQLAKRKTFSLVKEKKAARTLSAILLAFILTWTPYNIMVLVSTF 390

Human   391 CKDCVPETLWELGYWLCYVNSTINPMCYALCNKAFRDTFRLLLLCRWDKRRWRKIPKRPGSVHRT 455
            ||||||||||||||||||||||:||||||||||||||||||||||||||||||||||||||||||
Mouse   391 CKDCVPETLWELGYWLCYVNSTVNPMCYALCNKAFRDTFRLLLLCRWDKRRWRKIPKRPGSVHRT 455

Human   456 PSRQC 460
            |||||
Mouse   456 PSRQC 460

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CHRM1NP_000729.2 TM helix 1 28..52 CDD:341356 23/23 (100%)
TM helix 2 61..83 CDD:341356 21/21 (100%)
TM helix 3 99..121 CDD:341356 21/21 (100%)
TM helix 4 144..160 CDD:341356 15/15 (100%)
TM helix 5 186..209 CDD:341356 22/22 (100%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 225..256 29/30 (97%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 274..297 22/22 (100%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 310..351 38/40 (95%)
TM helix 6 364..386 CDD:341356 21/21 (100%)
TM helix 7 397..422 CDD:341356 23/24 (96%)
7tmA_mAChR_M1 26..429 CDD:341356 398/402 (99%)
Chrm1NP_001106167.1 7tmA_mAChR_M1 26..429 CDD:341356 398/402 (99%)
TM helix 1 27..53 CDD:341356 25/25 (100%)
TM helix 2 60..86 CDD:341356 25/25 (100%)
TM helix 3 98..128 CDD:341356 29/29 (100%)
TM helix 4 140..163 CDD:341356 22/22 (100%)
TM helix 5 185..214 CDD:341356 28/28 (100%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 225..257 30/31 (97%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 274..297 22/22 (100%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 310..351 38/40 (95%)
TM helix 6 358..388 CDD:341356 29/29 (100%)
TM helix 7 397..422 CDD:341356 23/24 (96%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C83955663
Domainoid 1 1.000 766 1.000 Domainoid score I3135
eggNOG 1 0.900 - - E1_KOG4220
HGNC 1 1.500 - -
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H20189
Inparanoid 1 1.050 937 1.000 Inparanoid score I6390
Isobase 1 0.950 - 0 Normalized mean entropy S5092
NCBI 1 1.000 - -
OMA 1 1.010 - - QHG45308
OrthoDB 1 1.010 - - D1245472at2759
OrthoFinder 1 1.000 - - FOG0001308
OrthoInspector 1 1.000 - - oto124365
orthoMCL 1 0.900 - - OOG6_124391
Panther 1 1.100 - - LDO PTHR24247
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2382
SonicParanoid 1 1.000 - - X324
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1919.250

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