DRSC/TRiP Functional Genomics Resources

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Protein Alignment SNF8 and Vps36

DIOPT Version :10

Sequence 1:NP_009172.2 Gene:SNF8 / 11267 HGNCID:17028 Length:258 Species:Homo sapiens
Sequence 2:NP_648660.1 Gene:Vps36 / 39523 FlyBaseID:FBgn0086785 Length:399 Species:Drosophila melanogaster


Alignment Length:230 Identity:57/230 - (24%)
Similarity:102/230 - (44%) Gaps:37/230 - (16%)


- Green bases have known domain annotations that are detailed below.


Human     3 RRGVGAGAIAKKKLAEAKYKERGTVLAEDQLA---QMSKQLDMFKTNLEEFASKHKQEIRKNPEF 64
            ::..|.|.|.:...|:||..:....||...|:   .|:|.:......:.....|.|.||  :.:.
  Fly   167 QKRTGIGGIERHLEAKAKATDENIALAFQDLSVLMAMAKDMVGVSKTISSKIRKQKGEI--SDDE 229

Human    65 RVQFQDMCATIGVDPLASGKGFWSEMLGVGDFYYELGVQIIEVCLALKHRNGGLITLEELHQQVL 129
            .|:|:....::|:|...:...|.|.    ..::..|..||.|:.|......||:::|.:::.:|.
  Fly   230 TVRFKSYLMSLGIDDPVTRDNFTSN----SAYFSSLARQICEMLLDPIEEQGGMMSLADVYCRVN 290

Human   130 KGRGKFAQDVSQDDLIRAIKKLKALGTGFGIIPVGGTYLIQSVPAELNMDHTVVLQLAEKNGYV- 193
            :.||  .:.:|.:||:.|.::|            .|...::|.|:...     ||||...:..: 
  Fly   291 RARG--LELLSPEDLLHACEQL------------SGPIRLRSFPSGAR-----VLQLESHDDALI 336

Human   194 ---TVSEIKA--SLKWETERARQVLEHLL--KEGL 221
               |:.:::|  ||..| |.|:|:...||  ||.|
  Fly   337 AVDTLEKVEAAESLAVE-ELAKQLGISLLLAKERL 370

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SNF8NP_009172.2 EAP30 6..225 CDD:461201 57/227 (25%)
Vps36NP_648660.1 PH-GRAM-like_Eap45 1..134 CDD:275408
EAP30 170..383 CDD:461201 57/227 (25%)
Blue background indicates that the domain is not in the aligned region.

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