DRSC/TRiP Functional Genomics Resources

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Protein Alignment SNX18 and YPT35

DIOPT Version :10

Sequence 1:XP_047272635.1 Gene:SNX18 / 112574 HGNCID:19245 Length:659 Species:Homo sapiens
Sequence 2:NP_011973.1 Gene:YPT35 / 856505 SGDID:S000001147 Length:214 Species:Saccharomyces cerevisiae


Alignment Length:236 Identity:48/236 - (20%)
Similarity:84/236 - (35%) Gaps:100/236 - (42%)


- Green bases have known domain annotations that are detailed below.


Human   196 STRSDLSLGSRGGSVPPQHHPSGPKSS--------------ATVSRNLNRFSTFVKSGGEAFVLG 246
            ||..:|.:.|       |....||.|:              ||::|...|.|:.:.:.       
Yeast    20 STEPELDIDS-------QQENEGPISASNSNDSTSHSNDCGATITRTRPRRSSSINAN------- 70

Human   247 EASGFVKDGDKLCVVLGPYGPEWQENPYPFQ------CTIDDPTKQTKF----------KGMKSY 295
                                       :.||      |||.:....|||          ..:|::
Yeast    71 ---------------------------FSFQKAHVSDCTIVNGDHGTKFAVWRITVFLEPNLKAF 108

Human   296 I----SYKLVPTHTQVPVHRRYKHFDWLYARL--------AEKFPVISVPHLP---EKQATGRFE 345
            .    |||       :..::||..|..|...|        .||...:.:||||   :..::.:::
Yeast   109 AAKRESYK-------IQTYKRYSDFVRLRENLLTRIKTAKPEKLNCLQIPHLPPSVQWYSSWKYQ 166

Human   346 E-----DFISKRRKGLIWWMNHMASHPVLAQC--DVFQHFL 379
            |     |:::||::||.:::||:..:..|.:.  |:...||
Yeast   167 EVNLNKDWLAKRQRGLEYFLNHIILNSSLVEMTKDILIQFL 207

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SNX18XP_047272635.1 SH3_SNX18 4..58 CDD:212830
PHA01929 <81..>138 CDD:177328
PX_SNX18 276..403 CDD:132819 35/142 (25%)
BAR_SNX18 415..656 CDD:153354
YPT35NP_011973.1 PX_YPT35 73..209 CDD:132813 35/142 (25%)
Blue background indicates that the domain is not in the aligned region.

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