DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CHM and chm

DIOPT Version :10

Sequence 1:NP_000381.1 Gene:CHM / 1121 HGNCID:1940 Length:653 Species:Homo sapiens
Sequence 2:XP_002938593.1 Gene:chm / 100488898 XenbaseID:XB-GENE-956389 Length:641 Species:Xenopus tropicalis


Alignment Length:656 Identity:369/656 - (56%)
Similarity:478/656 - (72%) Gaps:23/656 - (3%)


- Green bases have known domain annotations that are detailed below.


Human     1 MADTLPSEFDVIVIGTGLPESIIAAACSRSGRRVLHVDSRSYYGGNWASFSFSGLLSWLKEYQE- 64
            |||.||:||||:::|||||||||||||:|.|:||||:|:|:|||||||||:||||.:|::..:: 
 Frog     1 MADDLPTEFDVVILGTGLPESIIAAACTRIGQRVLHIDARNYYGGNWASFTFSGLQTWIENCKQE 65

Human    65 -NSDIVSDSPVWQDQILENEEAIALSRKDKTIQHVEVFCYASQDLHEDVEEAGALQKNHALVTSA 128
             |:::.:   ..:.|.|:|||.|..:::::|||::|||||:|.:..|.|||||||..|.||:|:.
 Frog    66 LNTELAA---ACKGQALDNEEIIPFNKRNQTIQNIEVFCYSSTEDGEAVEEAGALNINSALLTTV 127

Human   129 NSTEAADSAFLPTEDESLSTMSCEMLTEQTPSSDPENALEVNGAEVTGEKENHCDDKTCVPSTSA 193
            .|::.       .|:.|:........|||..|.:..:.||    |.|...:...|.     :...
 Frog   128 TSSDG-------QENSSIDISKNHTSTEQNDSPEGRSDLE----EATNSDQRSADS-----TLET 176

Human   194 EDMSENVPIAEDTTEQPKKNRITYSQIIKEGRRFNIDLVSKLLYSRGLLIDLLIKSNVSRYAEFK 258
            ..:.|..|......:|.....||||||:|||||||:|||||.||||||||:||||||||||.|||
 Frog   177 GTIVEVEPSLTQAIQQDSPKTITYSQIVKEGRRFNVDLVSKFLYSRGLLIELLIKSNVSRYTEFK 241

Human   259 NITRILAFREGRVEQVPCSRADVFNSKQLTMVEKRMLMKFLTFCMEYEKYPDEYKGYEEITFYEY 323
            |:||||.:..|::|||||||||||.||||:|||||:|||||...::||.:|::|:.||..||.|:
 Frog   242 NVTRILTYHNGKIEQVPCSRADVFASKQLSMVEKRILMKFLMHYIDYELHPEDYQDYENSTFLEF 306

Human   324 LKTQKLTPNLQYIVMHSIAMTSETASSTIDGLKATKNFLHCLGRYGNTPFLFPLYGQGELPQCFC 388
            ||:::|||.||:.|::||||..|.| .||:||||.::||.|||||||||||||:||.||:|||||
 Frog   307 LKSKQLTPTLQHFVLYSIAMVPENA-KTIEGLKAMQHFLRCLGRYGNTPFLFPMYGLGEIPQCFC 370

Human   389 RMCAVFGGIYCLRHSVQCLVVDKESRKCKAIIDQFGQRIISEHFLVEDSYFPENMCSRVQYRQIS 453
            ||||||||:|||.||::|||||.:|:.|||:||..|:|:..::.:|||||.||.:|:.|.|:|||
 Frog   371 RMCAVFGGVYCLHHSLECLVVDGDSKLCKAVIDHRGKRVDCKYVIVEDSYLPEQICANVSYKQIS 435

Human   454 RAVLITDRSVLKTDSDQQISILTVPAEEPGTFAVRVIELCSSTMTCMKGTYLVHLTCTSSK-TAR 517
            |||||||.|:|.|:|:|:||:||.|..:.|..||.:.|||||||||||.||||||||:|:| ||:
 Frog   436 RAVLITDCSILNTESNQEISVLTFPPADKGQTAVYITELCSSTMTCMKNTYLVHLTCSSTKPTAK 500

Human   518 EDLESVVQKLFVPYTEMEIENEQVEKPRILWALYFNMRDSSDISRSCYNDLPSNVYVCSGPDCGL 582
            ||||.|||:||...||.:||.....||::||||||||||||.:.|..|..||.|||||||||...
 Frog   501 EDLEPVVQQLFTLSTENDIEANDRTKPKVLWALYFNMRDSSGVPRQSYAGLPPNVYVCSGPDHCF 565

Human   583 GNDNAVKQAETLFQEICPNEDFCPPPPNPEDIILDGDSLQPEASESSAIPEANSETFKESTNLGN 647
            |||:||:|||.||.|:.|:|:||||.|||||||.||:..|.|.||||...::.:|...|:..:..
 Frog   566 GNDHAVQQAENLFHELYPSEEFCPPAPNPEDIIYDGECAQQEPSESSIPVDSKAEASAENETVVE 630

Human   648 LEESSE 653
            ..|.||
 Frog   631 SYEDSE 636

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CHMNP_000381.1 NAD_binding_8 13..>54 CDD:433218 31/40 (78%)
Rossmann-fold NAD(P)(+)-binding proteins 225..542 CDD:473865 209/317 (66%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 606..653 20/46 (43%)
chmXP_002938593.1 Rossmann-fold NAD(P)(+)-binding proteins 4..510 CDD:473865 296/525 (56%)

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