DRSC/TRiP Functional Genomics Resources

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Protein Alignment PKP3 and jac-1

DIOPT Version :10

Sequence 1:NP_001289958.1 Gene:PKP3 / 11187 HGNCID:9025 Length:812 Species:Homo sapiens
Sequence 2:NP_001294123.1 Gene:jac-1 / 178451 WormBaseID:WBGene00002175 Length:1256 Species:Caenorhabditis elegans


Alignment Length:839 Identity:218/839 - (25%)
Similarity:367/839 - (43%) Gaps:173/839 - (20%)


- Green bases have known domain annotations that are detailed below.


Human    56 LRAARVQEQVRARLLQLGQQPRHNGAAEPE--------------PEAETA------RGTSRGQYH 100
            :|.|..|..|.||.:....||    ..:|:              |..:.|      |.....::|
 Worm   408 IRPAAPQRHVPARKVSESVQP----PGQPQMVEVGDDVVKLEWAPSVQNARYIVEYREVGDPEWH 468

Human   101 T------LQAGFSSRSQGLSGDKTSGFRPIA---KPAYSPASWSSRSAVDLSCSRRLSSAHNGGS 156
            |      :|.|.  :.:||..:.|..|..|:   ..|..|:..|....:..:|:   :||     
 Worm   469 TANYDPIVQNGI--QVEGLHRNSTYEFCVISIVDNIASQPSETSDIIHLRPTCN---TSA----- 523

Human   157 AFGAAGYGGAQPTPPMPTRPVSFHERGG----------------VGSRADYDTLSLRSLRLGPGG 205
                     .:|.|.:...| .|.|..|                :|    || :..|.|:     
 Worm   524 ---------LRPAPNILEAP-EFLEVDGDKITICWLPAQSQLPVMG----YD-VEFRDLQ----- 568

Human   206 LDDRYSLVSEQLEPAATST-----------YRAFAYERQASSSSSRAGGLDW----PEATEVSPS 255
            .|||:..|::|...|...|           :|..|:  .||..|..:...|:    |.....| |
 Worm   569 QDDRWYKVNDQPVFACKMTVGDLIMDHDYQFRVLAH--NASGCSQPSPPSDFVHIEPSTNRFS-S 630

Human   256 RTIRAPAV--RTLQRFQSSHRSRGVGGAVPGAVLEPVARAPSVRSLSLSLADSGHLPDVHGFNSY 318
            .|:.:|.:  ..:.::..:.|.    ||||....|.|..:|.             ||:     ..
 Worm   631 DTMESPHLGHHDVVKYVEAERF----GAVPLLQEEMVRESPP-------------LPE-----RD 673

Human   319 GSHRTLQRLSSG--FDDIDLPSAVKYLMASDPNLQVLGAAYIQHKCYSDAAAKKQARSLQAVPRL 381
            .|...|:|.::.  :.|..|...::||.::|.:.|:..:.|:||..|:|...|::.|....:|:|
 Worm   674 DSPPPLRRANNNVQWRDPSLKEVIEYLSSADKDKQLNASGYLQHLTYTDNQIKEETREYGGIPKL 738

Human   382 VKLFNHANQEVQRHATGAMRNLIY--DNADNKLALVEENG---IFELLRTLREQDDELRKNVTGI 441
            :.|.......:|::|...::||.:  :|..||||::|.:|   |.|:|||  ..|..:::.....
 Worm   739 IALLRSDTPRIQKNACACLKNLSFGKENDANKLAVMEADGVRLIAEVLRT--THDASVKEEAAAA 801

Human   442 LWNLSSSDHLKDRLARDTLEQLTDLVLSPLSGAGGPPLIQQNASEAEIFYNATGFLRNLSSASQA 506
            ||||||:|.||..:.....|.|:..|::|:...|.....:...|  .:|.|:||.|||:|:|||.
 Worm   802 LWNLSSADMLKPVILESATEILSQQVIAPVLAVGTSDPTRHFGS--TLFKNSTGVLRNVSAASQQ 864

Human   507 TRQKMRECHGLVDALVTSINHALDAGKCEDKSVENAVCVLRNLSYRL-------YDEMPPSALQR 564
            .|:::|:...|::|||..:.||:...:.:..:||||||:|||||||:       ||   |:|...
 Worm   865 ARRRLRDIPNLIEALVHFLTHAIQKSQVDSPTVENAVCLLRNLSYRIQEVVDPNYD---PAAAHS 926

Human   565 LEGRGRRDLAGAPPGEVVGCFTPQSRRLRELPLAADALTFAEVSKDPK----GLEWLWSPQIVGL 625
            ...:..:.:|...|        .:.::.:|          .:..|:||    |...||.|.:|.|
 Worm   927 SSSKNMKHVASPKP--------EKKKKDKE----------KKKDKNPKNIVTGPSVLWQPHVVKL 973

Human   626 YNRLLQRCELNRHTTEAAAGALQNITAGDRRWAGVLSRLALEQERILNPLLDRVRTADHHQLRSL 690
            |.:|||... |..|.||:|||:||:.|.....:..: |.|:..|:.|..|::.:|..:...:.::
 Worm   974 YLKLLQDSS-NIETLEASAGAIQNLAACQFPPSAEV-RAAVRVEKGLPVLVELIRLPEDFVVCAV 1036

Human   691 TGLIRNLSRNARNKD-EMSTK-VVSHLIEKL--PGSVGEKSPPAEVLVNIIAVLNNLVVASPIAA 751
            ...:|||:.:.||:: .:|.| .:...::||  |||....:...:.:..::.:|..:|.:|....
 Worm  1037 ATALRNLAIDPRNRELIVSGKYALRDFLDKLPEPGSPRRSAISDQTIGAVLGILFEIVRSSAAYT 1101

Human   752 RDLLYFDGLRKLIFIKKKRDSPD-SEKSSRAASSLLANLWQYNKLHRDFRAKGYRKEDF 809
            :|:....|..||..:  .|..|. |.:..:.||.:|..:||:.:||..|:..|.::.||
 Worm  1102 KDVHELKGTDKLRAL--SRSYPTYSHRVCKYASQVLYVMWQHKELHDGFKRSGLKEADF 1158

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PKP3NP_001289958.1 armadillo repeat 336..361 CDD:293788 7/24 (29%)
ARM 365..405 CDD:214547 10/39 (26%)
armadillo repeat 369..405 CDD:293788 9/35 (26%)
ARM 407..447 CDD:214547 17/42 (40%)
armadillo repeat 411..445 CDD:293788 13/36 (36%)
armadillo repeat 464..500 CDD:293788 10/35 (29%)
armadillo repeat 508..549 CDD:293788 16/40 (40%)
jac-1NP_001294123.1 FN3 <205..>476 CDD:442628 14/71 (20%)
FN3 313..403 CDD:238020
FN3 528..619 CDD:238020 23/103 (22%)
PLN03200 691..>898 CDD:215629 66/210 (31%)
armadillo repeat 693..718 CDD:293788 7/24 (29%)
Arm 722..761 CDD:425727 9/38 (24%)
armadillo repeat 726..762 CDD:293788 9/35 (26%)
armadillo repeat 770..805 CDD:293788 13/36 (36%)
armadillo repeat 819..858 CDD:293788 12/40 (30%)
armadillo repeat 876..907 CDD:293788 13/30 (43%)
armadillo repeat 911..999 CDD:293788 29/109 (27%)
Arm 964..999 CDD:425727 18/35 (51%)
armadillo repeat 1009..1043 CDD:293788 7/33 (21%)
armadillo repeat 1051..1093 CDD:293788 8/41 (20%)
Blue background indicates that the domain is not in the aligned region.

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