Protein Alignment LDB3 and Ldb3

DIOPT Version :10

• Sequence 1: NP_001165081.1
• Gene: LDB3 / 11155
• HGNCID: 15710
• Length: 732
• Species: Homo sapiens
• Sequence 2: XP_006252699.3
• Gene: Ldb3 / 498587
• RGDID: 1564875
• Length: 771
• Species: Rattus norvegicus
• Alignment Length: 794
• Identity: 595/794 - (74%)
• Similarity: 615/794 - (77%)
• Gaps: 130/794 - (16%)

Human     1 MSYSVTLTGPGPWGFRLQGGKDFNMPLTISRITPGSKAAQSQLSQGDLVVAIDGVNTDTMTHLEA 65
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
  Rat    46 MSYSVTLTGPGPWGFRLQGGKDFNMPLTISRITPGSKAAQSQLSQGDLVVAIDGVNTDTMTHLEA 110

Human    66 QNKIKSASYNLSLTLQKSKRPIPISTTAPPVQTPLPVIPHQKDPALDTNGSLVAPSPSPEARASP 130
            ||||||||||||||||||||||||||||||:|:|||||||||||:||||.||..|||||||||||
  Rat   111 QNKIKSASYNLSLTLQKSKRPIPISTTAPPIQSPLPVIPHQKDPSLDTNSSLATPSPSPEARASP 175

Human   131 GTPGTPELRPTFSPAFSRPSAFSSLAEASDPGPPRASLRAKTSPEGARDLLGPKALPGSSQPRQY 195
            ||.||.|...|||.:||:.|..:|..|||.|..|..|..||.|.||.:..:.||.|||.||||.|
  Rat   176 GTSGTLEFGDTFSSSFSQTSVCTSHMEASGPVLPLGSPVAKASSEGTQGSVSPKVLPGPSQPRLY 240

Human   196 NNPIGLYSAETLREMAQMYQMSLRGKASGVGLPGGADYQERFNPSALKDSALSTHKPIEVKGLGG 260
            |||||||||||||||||||||||||||||.||.|
  Rat   241 NNPIGLYSAETLREMAQMYQMSLRGKASGAGLLG------------------------------- 274

Human   261 KATIIHAQYNTPISMYSQDAIMDAIAGQAQAQGSDFSGSLPIKDLAVDSASPVYQAVIKSQNKPE 325
                                                 ||||:|||||||||||||||||:|:|||
  Rat   275 -------------------------------------GSLPVKDLAVDSASPVYQAVIKTQSKPE 302

Human   326 DEADEWARRSSNLQSRSFRILAQMTGTEFMQDPDEEALRRS------------------------ 366
            ||||||||||||||||||||||||||||:||||||||||||
  Rat   303 DEADEWARRSSNLQSRSFRILAQMTGTEYMQDPDEEALRRSSTPIEHAPVCTSQATSPLLPASAP 367

Human   367 --------------------------------------RPQASSYSPAVAASSAPATHTSYSEGP 393
                                                  |||||:||||.|.|.|||.||||||||
  Rat   368 SPAAASPIAASPTLATAAAAHAVAASAAGPASSPVENPRPQASAYSPAAATSPAPAAHTSYSEGP 432

Human   394 AAPAPKPRVVTTASIRPSVYQPVPASTYSPSPGANYSPTPYTPSPAPAYTPSPAPAYTPSPVPTY 458
            ||||||||||||||||||||||||||.||||||||||||||||||||||||||||.|||||.|||
  Rat   433 AAPAPKPRVVTTASIRPSVYQPVPASPYSPSPGANYSPTPYTPSPAPAYTPSPAPTYTPSPAPTY 497

Human   459 TPSPAPAYTPSPAPNYNPAPSVAYSGGPAEPASRPPWVTDDSFSQKFAPGKSTTSISKQTLPRGG 523
            :|||||||||||||||||.||.||||||:|.||||||||||||||||||||||||:||||||||.
  Rat   498 SPSPAPAYTPSPAPNYNPTPSAAYSGGPSESASRPPWVTDDSFSQKFAPGKSTTSVSKQTLPRGA 562

Human   524 PAYTPAGPQVPPLARGTVQRAERFPASSRTPLCGHCNNVIRGPFLVAMGRSWHPEEFTCAYCKTS 588
            |||.|.||||.||||||.|||||||||||||||||||||||||||||||||||||||.|||||||
  Rat   563 PAYNPTGPQVTPLARGTFQRAERFPASSRTPLCGHCNNVIRGPFLVAMGRSWHPEEFNCAYCKTS 627

Human   589 LADVCFVEEQNNVYCERCYEQFFAPLCAKCNTKIMGEVMHALRQTWHTTCFVCAACKKPFGNSLF 653
            |||||||||||||||||||||||||:|||||||||||||||||||||||||:|||||||||||||
  Rat   628 LADVCFVEEQNNVYCERCYEQFFAPICAKCNTKIMGEVMHALRQTWHTTCFICAACKKPFGNSLF 692

Human   654 HMEDGEPYCEKDYINLFSTKCHGCDFPVEAGDKFIEALGHTWHDTCFICAVCHVNLEGQPFYSKK 718
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
  Rat   693 HMEDGEPYCEKDYINLFSTKCHGCDFPVEAGDKFIEALGHTWHDTCFICAVCHVNLEGQPFYSKK 757

Human   719 DRPLCKKHAHTINL 732
            |:||||||||.||:
  Rat   758 DKPLCKKHAHAINV 771

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
LDB3	NP_001165081.1	PDZ_PDLIM-like	4..82	CDD:467235	77/77 (100%)
		ZM	189..214	CDD:128974	22/24 (92%)
		DUF4749	263..365	CDD:464948	62/101 (61%)
		PHA03247	<387..554	CDD:223021	152/166 (92%)
		LIM1_ZASP_Cypher	556..607	CDD:188838	49/50 (98%)
		LIM2_Enigma_like	615..666	CDD:188748	49/50 (98%)
		LIM3_Enigma_like	674..727	CDD:188749	51/52 (98%)
Ldb3	XP_006252699.3	PDZ_PDLIM-like	49..127	CDD:467235	77/77 (100%)
		DUF4749	240..342	CDD:464948	95/169 (56%)
		PHA03247	<426..576	CDD:223021	136/149 (91%)
		LIM1_ZASP_Cypher	595..646	CDD:188838	49/50 (98%)
		LIM2_Enigma_like	654..705	CDD:188748	49/50 (98%)
		LIM3_ZASP_Cypher	713..767	CDD:188844	52/53 (98%)