DRSC/TRiP Functional Genomics Resources

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Protein Alignment LDB3 and ey

DIOPT Version :9

Sequence 1:NP_001165081.1 Gene:LDB3 / 11155 HGNCID:15710 Length:732 Species:Homo sapiens
Sequence 2:NP_001014693.1 Gene:ey / 43812 FlyBaseID:FBgn0005558 Length:898 Species:Drosophila melanogaster


Alignment Length:704 Identity:144/704 - (20%)
Similarity:217/704 - (30%) Gaps:214/704 - (30%)


- Green bases have known domain annotations that are detailed below.


Human    24 NMP--LTISRITPGSKAAQSQLSQGDLVVAIDGVNTDTMTHLEAQNKIKSASYNLSLTLQKSKRP 86
            |:|  .:|:|:.....|.:.|.|.|.     ...:|.....:.|:..: |...|:|.....|:..
  Fly   209 NIPSVSSINRVLRNLAAQKEQQSTGS-----GSSSTSAGNSISAKVSV-SIGGNVSNVASGSRGT 267

Human    87 IPISTTAPPVQTPL----------------PVIPHQKDPALDTNGSLVAPSPSPEARASP----- 130
            :..||......|||                ....::|...|:|..: ..|.|...|||:|     
  Fly   268 LSSSTDLMQTATPLNSSESGGASNSGEGSEQEAIYEKLRLLNTQHA-AGPGPLEPARAAPLVGQS 331

Human   131 ----GTPGT-PEL------------RPTFSPAFSRPSAF-SSLAEASDPGPPR-ASLRAKTS-PE 175
                ||..: |:|            :.::.|.....|.: :||:|......|. ||:.|..| |.
  Fly   332 PNHLGTRSSHPQLVHGNHQALQQHQQQSWPPRHYSGSWYPTSLSEIPISSAPNIASVTAYASGPS 396

Human   176 GARDLLGPKALPG-SSQPRQYNNPIGLYSAETLREMAQMYQMSLRGKASGVGLPGGA-------D 232
            .|..|..|..:.. :|...|.|.|:........:|: ..:|....|...|....|||       |
  Fly   397 LAHSLSPPNDIESLASIGHQRNCPVATEDIHLKKEL-DGHQSDETGSGEGENSNGGASNIGNTED 460

Human   233 YQERF--------NPSALKDSALS--------THKP--IEVKGLGGKATIIHA------------ 267
            .|.|.        |.::..:..:.        ||.|  ...:.|.||..:..|            
  Fly   461 DQARLILKRKLQRNRTSFTNDQIDSLEKEFERTHYPDVFARERLAGKIGLPEARIQVWFSNRRAK 525

Human   268 ---------QYNTPISMYSQDAIMDAIAGQAQAQGSDFSGSL-PIKDLAVDSASPVYQAVIKSQN 322
                     |..||   .|..|...:.:..|.|..:|...|| ....|...||.....:.|...:
  Fly   526 WRREEKLRNQRRTP---NSTGASATSSSTSATASLTDSPNSLSACSSLLSGSAGGPSVSTINGLS 587

Human   323 KPEDEADEWARRSSNLQSRSFRILAQMTGTEFMQDP------------DEEALRRSRPQASSYSP 375
            .|       :..|:|:.:.:..     .|.:..:.|            |.:..|:|.......||
  Fly   588 SP-------STLSTNVNAPTLG-----AGIDSSESPTPIPHIRPSCTSDNDNGRQSEDCRRVCSP 640

Human   376 A-VAASSAPATHTSYSEGPA-----APAPKPRVVTTASIRPSVYQPVPASTYSPSPGANYSPTPY 434
            . :.......||...|.|.|     .||..||:                :..|.|.||.||...:
  Fly   641 CPLGVGGHQNTHHIQSNGHAQGHALVPAISPRL----------------NFNSGSFGAMYSNMHH 689

Human   435 TP----------SPAPAYTPSP-APAYTPSPVP---TYTPSPA-PAYTPSPAPNYNPAPSVAYSG 484
            |.          :|.|::..|. .|...|||:|   ..|||.. |.:.....|...||......|
  Fly   690 TALSMSDSYGAVTPIPSFNHSAVGPLAPPSPIPQQGDLTPSSLYPCHMTLRPPPMAPAHHHIVPG 754

Human   485 GPAEPAS-----------------------------RPPWVT----DDSFSQKFAPGKSTT---S 513
            ....||.                             .||..:    |.|||...:...:.|   :
  Fly   755 DGGRPAGVGLGSGQSANLGASCSGSGYEVLSAYALPPPPMASSSAADSSFSAASSASANVTPHHT 819

Human   514 ISKQTLP-------------RGGPAYTPAGPQVPPLARGTVQRAERFPASSRTP 554
            |::::.|             ..|.:..|..|.|...|..:...|.  .|::.||
  Fly   820 IAQESCPSPCSSASHFGVAHSSGFSSDPISPAVSSYAHMSYNYAS--SANTMTP 871

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LDB3NP_001165081.1 PDZ_signaling 5..81 CDD:238492 13/58 (22%)
DUF4045 <77..180 CDD:330572 32/143 (22%)
ZM 189..214 CDD:128974 5/24 (21%)
DUF4749 263..353 CDD:318205 19/111 (17%)
Atrophin-1 <387..554 CDD:331285 48/235 (20%)
LIM1_ZASP_Cypher 556..607 CDD:188838
LIM2_Enigma_like 615..666 CDD:188748
LIM3_Enigma_like 674..727 CDD:188749
eyNP_001014693.1 PAX 98..221 CDD:128645 4/11 (36%)
Homeobox 475..527 CDD:278475 7/51 (14%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R6207
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
11.030

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