DRSC/TRiP Functional Genomics Resources

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Protein Alignment LDB3 and Zasp66

DIOPT Version :10

Sequence 1:NP_001165081.1 Gene:LDB3 / 11155 HGNCID:15710 Length:732 Species:Homo sapiens
Sequence 2:NP_729395.2 Gene:Zasp66 / 38988 FlyBaseID:FBgn0035917 Length:430 Species:Drosophila melanogaster


Alignment Length:384 Identity:81/384 - (21%)
Similarity:138/384 - (35%) Gaps:95/384 - (24%)


- Green bases have known domain annotations that are detailed below.


Human    39 AQSQLSQGDLVVAIDGVNTDTMTHLEAQNKIKSASYNLSLTLQKSKR------------PIPIS- 90
            |..:|.:||::..|...:...::|.:||...:.|...:.|.:.:..:            |...| 
  Fly    74 AHGELLRGDIISKIGEYDARDLSHADAQQLFRGAGNEIRLVVHRDNKIAYTQGATQEAGPGSRSN 138

Human    91 TTAPPV------------------------QTPLPVIPHQKDPALDTNGSLVAP----SPSP--- 124
            :|.|||                        |.|:..:|....|.|:::|....|    ||.|   
  Fly   139 STLPPVTPDLMPHRGPSPFLPGPSHFERALQLPVDTLPQTVFPQLNSSGGYEVPSTVFSPKPTRD 203

Human   125 -------EARASPGTP--GTPELRPTFSPAFSRPSAFSSLAEASDPGPPRAS---------LRAK 171
                   |..|....|  .||.:.|........|:..|.|....:|. .||.         ::.:
  Fly   204 HQQDVDEEQAAIVNQPYRTTPLVLPGAKVKKDAPTTESYLRHYPNPA-VRAHPGHDYHDSIMKQR 267

Human   172 TSPEGARDLLGPKALPGSSQPRQYNNPIGLYSAETLREMAQMYQMSLRGKASGVGLPGGADYQER 236
            .:......::|.:|..|....:|:|:||||||...:.:       ::|..     :|.......|
  Fly   268 VADTMLHKVVGSEADTGRVFHKQFNSPIGLYSNNNIED-------TIRST-----VPFATSESNR 320

Human   237 FNPSALKDSALSTHKPIEVKGLGGKATIIHAQYNTPISMYSQDAIMDAIAGQAQAQGSDFSGSLP 301
                 ||||.|  |:|:..|..|.|.|:   ||: |.:..:..||.:........|.|....::|
  Fly   321 -----LKDSPL--HRPLPTKLNGYKKTV---QYD-PRNSETYRAIQEEGGYSNYGQSSPQEVTIP 374

Human   302 IK------DLAVDSASPVYQAVIKSQNKPEDEADEWARRSSNLQSRSFRILAQMTGTEF 354
            ::      :..|....||...|.:......:..||..|:|.:.....:.::.   .||:
  Fly   375 VQTKVYQPNRLVPGKKPVSAPVSRPPYNVVNTHDENIRQSGSFNRLMYSVIG---ATEY 430

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LDB3NP_001165081.1 PDZ_PDLIM-like 4..82 CDD:467235 10/42 (24%)
ZM 189..214 CDD:128974 8/24 (33%)
DUF4749 263..365 CDD:464948 19/98 (19%)
PHA03247 <387..554 CDD:223021
LIM1_ZASP_Cypher 556..607 CDD:188838
LIM2_Enigma_like 615..666 CDD:188748
LIM3_Enigma_like 674..727 CDD:188749
Zasp66NP_729395.2 PDZ_canonical <68..117 CDD:483948 10/42 (24%)
DUF4749 285..374 CDD:464948 29/111 (26%)
Blue background indicates that the domain is not in the aligned region.

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