DRSC/TRiP Functional Genomics Resources

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Protein Alignment LDB3 and Pax

DIOPT Version :10

Sequence 1:NP_001165081.1 Gene:LDB3 / 11155 HGNCID:15710 Length:732 Species:Homo sapiens
Sequence 2:NP_523601.2 Gene:Pax / 35215 FlyBaseID:FBgn0041789 Length:581 Species:Drosophila melanogaster


Alignment Length:625 Identity:162/625 - (25%)
Similarity:225/625 - (36%) Gaps:172/625 - (27%)


- Green bases have known domain annotations that are detailed below.


Human   130 PGTPGTPELRPTFSPAFSRPSAFSSLAEASDPGPPRASLRAKT--------------SPEGARDL 180
            ||.|..|:  |.:.....:..|... .:..|..|...|||.|.              ||....|.
  Fly    40 PGQPQQPQ--PQYGTVQPKHQALQQ-QQFVDNTPGYGSLRGKAQPQVYQEHYSVETRSPTAGHDF 101

Human   181 LGPKALPGSSQPRQYNNPIGLYSAETLREMAQMYQMSLRGKASG--VGLPGGADYQERFNPSALK 243
            .|....||      |.|                 |.||..:|:|  .||            |.| 
  Fly   102 NGSSTTPG------YAN-----------------QGSLPRQAAGASTGL------------SEL- 130

Human   244 DSALSTHKPIEVKGLGGKATIIHAQYNTPISMYSQDAIMDAIAGQAQAQGSDFSGSLPIKDLAVD 308
            ||.|...:.|:|.          ..|:||:|.|:   .|::.|...:....|   || :|:|  |
  Fly   131 DSLLQDLQKIDVP----------VNYSTPVSKYN---TMNSYATVEERPSVD---SL-LKEL--D 176

Human   309 SASPVYQAVIKSQNKPEDEADEWARRSSNLQSRSFRILAQMTGTEFMQDPD------EEALRRSR 367
            :|. :|.....|.:|            |....|...|..:.|.||.:..||      ||.:.:  
  Fly   177 NAH-IYAVPNGSAHK------------SPTPGRHVTITVRETKTEKLTGPDGPVGTVEEQIVQ-- 226

Human   368 PQASSYSPAVAASSAPATHTSYSEGPAAPAPKPRVVTTASIRPSVYQPVPASTYSPSPGANYSPT 432
             |..||:|..|. .....|.:|:    :.|.|......||:          |.:..|.|.|    
  Fly   227 -QKDSYTPNHAV-PGQQVHQAYT----SQATKELDDLMASL----------SDFKVSNGTN---- 271

Human   433 PYTPSPAPAYTPSPAPAYTPSPV--PTYTPSPAPAYTPSPAPNYNPAPSVAYSGGPAEPASRPPW 495
                    .......|....|.|  .|.|....|          |.....|:.....|..:    
  Fly   272 --------GIGNGSHPQQHSSTVQHQTVTDYARP----------NKGSQQAHLTQTIEETT---- 314

Human   496 VTDDSFSQKFAP--GKSTTSISKQTLPRGGPAYTPAGPQVPPLARGTVQRAERFPASSRTPLCGH 558
            :.:||...:...  |....::|:|.:                   .|||:.          .|..
  Fly   315 IVEDSREDQLDSMLGNLQANMSRQGV-------------------NTVQKG----------CCNA 350

Human   559 CNNVIRGPFLVAMGRSWHPEEFTCAYCKTSLADVCFVEEQNNVYCERCYEQFFAPLCAKCNTKIM 623
            |...|.|..:.|:|::||||.|||.:|...|....|.|.....|||..|...|:|.||.||..|:
  Fly   351 CEKPIVGQVITALGKTWHPEHFTCNHCSQELGTRNFFERDGFPYCEPDYHNLFSPRCAYCNGAIL 415

Human   624 GEVMHALRQTWHTTCFVCAACKKPFGNSLFHMEDGEPYCEKDYINLFSTKCHGCDFPVEAGDKFI 688
            .:.:.||.:||||..|.||.|.:.||...||..||:|||..||..:|:.||:||:..:.  :.:|
  Fly   416 DKCVTALDKTWHTEHFFCAQCGQQFGEEGFHERDGKPYCRNDYFEMFAPKCNGCNRAIM--ENYI 478

Human   689 EALGHTWHDTCFICAVCHVNLEGQPFYSKKDRPLCKKHAH 728
            .||...||..||:|..|....:|..|:..:..|.|:.|.|
  Fly   479 SALNSQWHPDCFVCRDCRQPFQGGSFFDHEGLPYCETHYH 518

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LDB3NP_001165081.1 PDZ_PDLIM-like 4..82 CDD:467235
ZM 189..214 CDD:128974 2/24 (8%)
DUF4749 263..365 CDD:464948 27/107 (25%)
PHA03247 <387..554 CDD:223021 26/170 (15%)
LIM1_ZASP_Cypher 556..607 CDD:188838 20/50 (40%)
LIM2_Enigma_like 615..666 CDD:188748 24/50 (48%)
LIM3_Enigma_like 674..727 CDD:188749 16/52 (31%)
PaxNP_523601.2 LIM1_Paxillin_like 348..400 CDD:259830 20/51 (39%)
LIM2_Paxillin_like 407..458 CDD:188723 24/50 (48%)
LIM3_Paxillin_like 466..518 CDD:188724 17/53 (32%)
LIM4_Paxillin 525..576 CDD:188795
Blue background indicates that the domain is not in the aligned region.

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