DRSC/TRiP Functional Genomics Resources

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Protein Alignment LDB3 and pxl1

DIOPT Version :10

Sequence 1:NP_001165081.1 Gene:LDB3 / 11155 HGNCID:15710 Length:732 Species:Homo sapiens
Sequence 2:NP_596112.1 Gene:pxl1 / 2540856 PomBaseID:SPBC4F6.12 Length:438 Species:Schizosaccharomyces pombe


Alignment Length:516 Identity:109/516 - (21%)
Similarity:181/516 - (35%) Gaps:132/516 - (25%)


- Green bases have known domain annotations that are detailed below.


Human   250 HKPI-EVKGLGGKATIIHAQYNTPISMYSQDAIMDAIAGQAQAQGS-DFSGSLPIKDLAVDSASP 312
            |.|| |:.....:.|...|..::|:|  :..:.::.:.....:.|: :|:|.        ..|:|
pombe     2 HSPIPELPRFERRLTGPRAAPSSPVS--TNGSPLNNLVRSRLSDGALNFTGG--------RIATP 56

Human   313 VYQAVIKSQNKPEDEADEWARRSSNLQSRSFRILAQMTGTEFMQDPDEEALRRSRPQASSYSPAV 377
            :.|..:|:...|      .::|:..::....|          ...||:|.   ||...||....:
pombe    57 LPQPSLKTPESP------LSKRNPTIKQNRVR----------FDLPDDEL---SRSNVSSPEKTL 102

Human   378 AASSAPATHTS-------------YS---EGPAAPAPKPRVVTTASIRPSVY------QPVP--- 417
            ..|::.:|..|             ||   |.|::|......|....:| :||      ||:.   
pombe   103 LTSASTSTFDSLKKELLPELPSLAYSDDDEFPSSPEELNSHVNYPDVR-NVYDCHTGLQPLVDHD 166

Human   418 ---------ASTYSPSPGANYSPTPYTPSPA-PAYTPSPAPAYTPSPVPTYTPSPAPAYTPSPAP 472
                     ||...|:.....|.......|| .::..:||.:..|.|.||       :..||...
pombe   167 CIEDRQKTFASKQLPTLPLQKSSKLSNRRPALHSFHSAPANSLYPLPTPT-------SQLPSNLS 224

Human   473 NYNPAPSVAYSGGPAEPASRPPWVTDDSFSQKFAPGKSTTSISKQTLPRGGPAYTPAGPQVPPLA 537
            :.|...|                   ||.........::|.                    |.|.
pombe   225 SNNLFQS-------------------DSLKPSMVSSHTSTK--------------------PVLY 250

Human   538 RGTVQRAERFPASSRTPLCGHCNNVIR-GPFLVAMGRSWHPEEFTCAYCKTSLADVCFVEEQNNV 601
            ||..:::           |..|...:| |..:.|.|:..||:.|.|..|..:|..|.|...:...
pombe   251 RGNSEKS-----------CHSCGGSLRAGRIISASGKKLHPQCFKCDTCSQNLEHVGFYYREGKF 304

Human   602 YCERCYEQFFAPLCAKCNTKIMGEVMHALRQTWHTTCFVCAACKKPFG-NSLFHMEDGEPYCEKD 665
            ||...|.:.|:|.|..|.|.|..:.:|.....:|.....||.|.:.|. |......|...:|:..
pombe   305 YCHLDYHEQFSPRCKHCKTPIEDQAVHINNDWFHENHHFCAGCSEVFNVNIPCIYRDDLYWCQTC 369

Human   666 YINLFSTKCHGCDFPVEAGDKFIEALGH--TWHDTCFICAVCHVNLEGQPFYSKKDRPLCK 724
            |.|.::.||..|..|:..    |...|.  .:|..|:.|..|:..|..:.::..::.|:|:
pombe   370 YDNKYAVKCKKCRKPILG----ISVKGSDGEYHSQCWTCGACNALLGDEGYFMIENTPICR 426

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LDB3NP_001165081.1 PDZ_PDLIM-like 4..82 CDD:467235
ZM 189..214 CDD:128974
DUF4749 263..365 CDD:464948 17/102 (17%)
PHA03247 <387..554 CDD:223021 35/201 (17%)
LIM1_ZASP_Cypher 556..607 CDD:188838 16/51 (31%)
LIM2_Enigma_like 615..666 CDD:188748 13/51 (25%)
LIM3_Enigma_like 674..727 CDD:188749 12/53 (23%)
pxl1NP_596112.1 LIM 258..314 CDD:395333 17/55 (31%)
LIM 318..370 CDD:259829 13/51 (25%)
LIM 378..428 CDD:259829 12/53 (23%)
Blue background indicates that the domain is not in the aligned region.

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