DRSC/TRiP Functional Genomics Resources

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Protein Alignment LDB3 and alp-1

DIOPT Version :10

Sequence 1:NP_001165081.1 Gene:LDB3 / 11155 HGNCID:15710 Length:732 Species:Homo sapiens
Sequence 2:NP_001023371.1 Gene:alp-1 / 177701 WormBaseID:WBGene00001132 Length:1424 Species:Caenorhabditis elegans


Alignment Length:852 Identity:219/852 - (25%)
Similarity:324/852 - (38%) Gaps:222/852 - (26%)


- Green bases have known domain annotations that are detailed below.


Human    19 GGKDFNMPLTISRITPGS-KAAQSQL---SQGDLVVAIDGVNTDTMTHLEAQNKIKSASYNLSLT 79
            |.||.:.|:.:.|....| :..||.:   |..::..:.:...|.|..:.|..||.:........|
 Worm   652 GLKDVHAPVPLPRSPQHSPQPVQSYIVRSSDANVTTSTNLQTTVTRQYTENDNKSQFLQQPHPDT 716

Human    80 LQKSKRPIPI----STTAPPVQTPLPVIPHQKDPALDTNGSLVAP----SPSPEARASPGTPGTP 136
            :..|..|||.    ..|.|...|||.|      |.:..|....:|    .||...|||.....|.
 Worm   717 IDSSTSPIPTIRLNRHTKPEPSTPLSV------PTVSINDIATSPIKITEPSRPWRASVSNSATS 775

Human   137 ELR-----------------------------PTFSPAFSRPSA--FSSLAEASDPGP------P 164
            .::                             ....|:...||.  |.::...:.|.|      |
 Worm   776 PIKIHESRVQPVDESRGLHRHEEKAQIETSTIKIHEPSSPPPSVHKFGAVNTRAAPAPVQFMQTP 840

Human   165 RASLRAKTSPEGARDLLGPKALPGSSQPRQYNNPIGLYSAETLREMAQMYQMSLRGKASGVGLPG 229
            |.:::.. .|.|          |..:.|...::||       .|:.....::.. .|.|...:|.
 Worm   841 RIAVKIH-EPTG----------PSPTPPSTPSHPI-------KRDPKHFKKVDF-SKTSPTVIPE 886

Human   230 GADYQERFNPSAL------KDSALSTHKPIEVKGLGGKATIIHAQYNTPISMYSQDAIMDAIAGQ 288
            ..|..:..:.|.:      :|.::|..|.              |.|:...|....:.|.:.    
 Worm   887 WKDSADIVDESDILTECSREDDSISFLKA--------------ATYDGDESEMIDNNIDNK---- 933

Human   289 AQAQGSDFSGSLPIKDLAVDSASPVYQ-----AVIKSQNKPEDEAD-EWARRSSNL------QSR 341
                 ||.:.:..|::..||    |.|     .|:..:.....||: :|.:|:..|      ..|
 Worm   934 -----SDITSTFDIEEEEVD----VVQDRERIRVVGRKGGEGGEAEKQWRQRAMELLDDDAQTER 989

Human   342 SFRILA----QMTGTEFMQDPDEEALRRSRPQASSYSPAVAASSAPATHTS---YSEGPAAPAPK 399
            ..||:|    ::.|...|:|.|.                |.|....|.|.|   .::...:...:
 Worm   990 DLRIVAALNERLQGLREMEDDDR----------------VRAIECIARHQSELEQTQTQLSTLLE 1038

Human   400 PRVVTTASIRPSVYQPVPASTYSPS-PGANYSPT---------------------------PYTP 436
            ..:|...::||.:....|....:.| ....:.||                           ...|
 Worm  1039 SAIVYLQNLRPELELTEPIDNDAKSLETVKFEPTRAEQRVNEIRKKVLEDLEHLPILGDGMDSVP 1103

Human   437 SPAPAYTPSPAPAYTPSPVPTYTPSPAPAYTP----------------SPAPNYNPAPSVAYSGG 485
            .|.|.....|..:|  .|:....|.|| |.:|                .|.|..|.|.|   |..
 Worm  1104 PPPPERKVFPFQSY--QPIAPQFPVPA-AESPVTQSLHDVLDEFYSLRKPTPTQNVAQS---SDT 1162

Human   486 PAEP-----ASRPPWVTDDSFSQKFAPGKSTTSISKQTLPRGGPAYTPAG-----PQVPPLARGT 540
            .||.     |||...|..|  ..|.|.|.:.:|   |...:.|.:||...     .:..|.....
 Worm  1163 TAEDSRNFLASRLGQVMID--ENKKAGGSNGSS---QHHNQQGSSYTKTSFERTTTETRPQQNTG 1222

Human   541 VQRAERFPAS-------------SRTPLCGHCNNVIRGPFLVAMGRSWHPEEFTCA--YCKTSLA 590
            ..||..|..:             .|.|.|..|...|||.|::|.|:||.||.|.||  .|:..|.
 Worm  1223 APRAGDFRGTGHLTTTTTTQQNGGRAPFCESCKQQIRGAFVLATGKSWCPEHFVCANSSCRRRLL 1287

Human   591 DVCFVEEQNNVYCERCYEQFFAPLCAKCNTKIMGEVMHALRQTWHTTCFVCAACKKPFGNSLFHM 655
            :..||||....:||.|:||..||.|.||:..|:.:.::||::.||.|||.||.|:||||||.|::
 Worm  1288 ECGFVEEDGQKFCESCFEQHIAPRCNKCSKPIISDCLNALQKKWHPTCFTCAHCQKPFGNSAFYL 1352

Human   656 EDGEPYCEKDYINLFSTKCHGCDFPVEAGDKFIEALGHTWHDTCFICAVCHVNLEGQPFYSKKDR 720
            |.|.||||:|:..||:|||..|.:|:||||:::||||:.:|..||.||.|:.||||:.|::|..:
 Worm  1353 EQGLPYCEQDWNALFTTKCVSCRYPIEAGDRWVEALGNAFHSNCFTCARCNHNLEGESFFAKNGQ 1417

Human   721 PLCKKHA 727
            |.|:.||
 Worm  1418 PFCRLHA 1424

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LDB3NP_001165081.1 PDZ_PDLIM-like 4..82 CDD:467235 15/66 (23%)
ZM 189..214 CDD:128974 4/24 (17%)
DUF4749 263..365 CDD:464948 25/117 (21%)
PHA03247 <387..554 CDD:223021 45/236 (19%)
LIM1_ZASP_Cypher 556..607 CDD:188838 23/52 (44%)
LIM2_Enigma_like 615..666 CDD:188748 27/50 (54%)
LIM3_Enigma_like 674..727 CDD:188749 25/52 (48%)
alp-1NP_001023371.1 PDZ_canonical 5..82 CDD:483948
ZM 137..162 CDD:128974
LIM_ALP_like 220..271 CDD:188746
PRK10263 <569..>834 CDD:236669 39/187 (21%)
LIM1_Enigma_like_1 1251..1304 CDD:188839 23/52 (44%)
LIM 1312..1363 CDD:413332 27/50 (54%)
LIM3_Enigma_like_1 1371..1424 CDD:188845 25/52 (48%)
Blue background indicates that the domain is not in the aligned region.

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