| Sequence 1: | XP_005256484.1 | Gene: | CHD3 / 1107 | HGNCID: | 1918 | Length: | 2115 | Species: | Homo sapiens |
|---|---|---|---|---|---|---|---|---|---|
| Sequence 2: | XP_038943541.1 | Gene: | Chd3 / 303241 | RGDID: | 1311923 | Length: | 2120 | Species: | Rattus norvegicus |
| Alignment Length: | 2125 | Identity: | 2036/2125 - (95%) |
|---|---|---|---|
| Similarity: | 2067/2125 - (97%) | Gaps: | 15/2125 - (0%) |
- Green bases have known domain annotations that are detailed below.
|
Human 1 MASPLRDEEEEEEEMVVSEEEEEEEEEGDEEEEEEVEAADEDDEEDDDEGVLGRGPGHDRGRDRH 65
Human 66 SPPGCHLFPPPPPPPPPLPPPPPPPPPDKDDIRLLPSALGVKKRKRGPKKQKENKPGKPRKRKKR 130
Human 131 DSEEEFGSERDEYREKSESGGSEYGTGPGRKRRRKHREKKEKKTKRRKKGEGDGGQKQVEQKSSA 195
Human 196 TLLLTWGLEDVEHVFSEEDYHTLTNYKAFSQFMRPLIAKKNPKIPMSKMMTILGAKWREFSANNP 260
Human 261 FKGSAAAVAAAAAAAAAAVAEQVSAAVSSATPIAPSG-PPALPPPPAADIQPPPIRRAKTKEGKG 324
Human 325 PGHKRRSKSPRVPDGRKKLRGKKMAPLKIKLGLLGGKRKKGGSYVFQSDEGPEPEAEESDLDSGS 389
Human 390 VHSASGRPDGPVRTKKLKRGRPGRKKKK------VLGCPAVAGEEEVDGYETDHQDYCEVCQQGG 448
Human 449 EIILCDTCPRAYHLVCLDPELDRAPEGKWSCPHCEKEGVQWEAKEEEEEYEEEGEEEGEKEEEDD 513
Human 514 HMEYCRVCKDGGELLCCDACISSYHIHCLNPPLPDIPNGEWLCPRCTCPVLKGRVQKILHWRWGE 578
Human 579 PPVAVPAPQQADGNPDVPPPRPLQGRSEREFFVKWVGLSYWHCSWAKELQLEIFHLVMYRNYQRK 643
Human 644 NDMDEPPPLDYGSGEDDGKSDKRKVKDPHYAEMEEKYYRFGIKPEWMTVHRIINHSVDKKGNYHY 708
Human 709 LVKWRDLPYDQSTWEEDEMNIPEYEEHKQSYWRHRELIMGEDPAQPRKYKKKKKELQGDGPPSSP 773
Human 774 TNDPTVKYETQPRFITATGGTLHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTIQTIVFLYSLY 838
Human 839 KEGHTKGPFLVSAPLSTIINWEREFQMWAPKFYVVTYTGDKDSRAIIRENEFSFEDNAIKGGKKA 903
Human 904 FKMKREAQVKFHVLLTSYELITIDQAALGSIRWACLVVDEAHRLKNNQSKFFRVLNGYKIDHKLL 968
Human 969 LTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADISKEDQIKKLHDLLGPHMLRRLKADVFK 1033
Human 1034 NMPAKTELIVRVELSPMQKKYYKYILTRNFEALNSRGGGNQVSLLNIMMDLKKCCNHPYLFPVAA 1098
Human 1099 MESPKLPSGAYEGGALIKSSGKLMLLQKMLRKLKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYE 1163
Human 1164 RIDGGITGALRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSR 1228
Human 1229 AHRIGQANKVMIYRFVTRASVEERITQVAKRKMMLTHLVVRPGLGSKAGSMSKQELDDILKFGTE 1293
Human 1294 ELFKDENEGENKEEDSSVIHYDNEAIARLLDRNQDATEDTDVQNMNEYLSSFKVAQYVVREEDKI 1358
Human 1359 EEIEREIIKQEENVDPDYWEKLLRHHYEQQQEDLARNLGKGKRVRKQVNYNDAAQEDQDNQSEYS 1423
Human 1424 VGSEEEDEDFDERPEGRRQSKRQLRNEKDKPLPPLLARVGGNIEVLGFNTRQRKAFLNAVMRWGM 1488
Human 1489 PPQDAFTTQWLVRDLRGKTEKEFKAYVSLFMRHLCEPGADGSETFADGVPREGLSRQQVLTRIGV 1553
Human 1554 MSLVKKKVQEFEHINGRWSMPELMPDPSADSKRSSRASSPTKTSPTTPEASATNSPCTSKPATPA 1618
Human 1619 PSEKGEGIRTPLEKEEAENQEEKPEKNSRIGEKMETEADAPSPAPSLGERLEPRKIPLEDEVPGV 1683
Human 1684 PGEMEPEPGYRGDREKSATESTPGERGEEKPLDGQEHRERPEGETGDLGKRAEDVKGDRELRPG- 1747
Human 1748 PRDEPRSNGRREEKTEKPRFMFNIADGGFTELHTLWQNEERAAISSGKLNEIWHRRHDYWLLAGI 1812
Human 1813 VLHGYARWQDIQNDAQFAIINEPFKTEANKGNFLEMKNKFLARRFKLLEQALVIEEQLRRAAYLN 1877
Human 1878 LSQEPAHPAMALHARFAEAECLAESHQHLSKESLAGNKPANAVLHKGKGRGGPARGRAHNAASEP 1942
Human 1943 AGGVAERHEGGRDPPASHAVPNTPHRSPPSDVRAQHPQPAGQQGHGASPHTGLPAGSLRYTSGVR 2007
Human 2008 GGLQRRTRRGPGRRRRQLQPDACRVLHHSRHQRPSSACEEGEGNGGGIGVRR--AGSEGAPSRGG 2070
Human 2071 DLYRRLTGSQACPSPRPRPRGRPPAQALGPAASPPPSPPLGPSLG 2115 |
| Gene | Sequence | Domain | Region | External ID | Identity |
|---|---|---|---|---|---|
| CHD3 | XP_005256484.1 | CHDNT | 207..259 | CDD:285335 | 51/51 (100%) |
| PHD1_CHD_II | 440..482 | CDD:277006 | 41/41 (100%) | ||
| PHD2_CHD_II | 517..559 | CDD:277007 | 41/41 (100%) | ||
| CHROMO | 568..644 | CDD:214605 | 72/75 (96%) | ||
| CHROMO | 692..744 | CDD:214605 | 47/51 (92%) | ||
| SNF2_N | 798..1094 | CDD:278600 | 295/295 (100%) | ||
| DEXDc | 815..973 | CDD:238005 | 157/157 (100%) | ||
| MPH1 | <938..1317 | CDD:224036 | 377/378 (100%) | ||
| Helicase_C | 1118..1233 | CDD:278689 | 113/114 (99%) | ||
| DUF1087 | <1371..1415 | CDD:283996 | 43/43 (100%) | ||
| DUF1086 | 1437..1576 | CDD:283992 | 138/138 (100%) | ||
| CHDCT2 | 1796..>1923 | CDD:285336 | 126/126 (100%) | ||
| Chd3 | XP_038943541.1 | CHDNT | 203..256 | CDD:400425 | 52/52 (100%) |
| TNG2 | <384..488 | CDD:227367 | 93/103 (90%) | ||
| PHD1_CHD_II | 443..485 | CDD:277006 | 41/41 (100%) | ||
| PHD2_CHD_II | 519..561 | CDD:277007 | 41/41 (100%) | ||
| CD1_tandem_CHD3-4_like | 566..644 | CDD:349314 | 74/77 (96%) | ||
| CD2_tandem_CHD3-4_like | 689..743 | CDD:349309 | 49/53 (92%) | ||
| PLN03142 | 780..>1334 | CDD:215601 | 552/553 (100%) | ||
| DEXHc_CHD3 | 797..1028 | CDD:350813 | 230/230 (100%) | ||
| DUF1087 | <1375..1418 | CDD:399459 | 42/42 (100%) | ||
| DUF1086 | 1439..1578 | CDD:368921 | 138/138 (100%) | ||
| PHA03169 | <1570..>1761 | CDD:223003 | 165/190 (87%) | ||
| CHDCT2 | 1799..1925 | CDD:400426 | 125/125 (100%) |
| Tool | Simple Score | Weighted Score | Original Tool Information | |||
|---|---|---|---|---|---|---|
| BLAST Result | Score | Score Type | Cluster ID | |||
| Compara | 1 | 0.930 | - | - | C83685604 | |
| Domainoid | 1 | 1.000 | 573 | 1.000 | Domainoid score | I5329 |
| eggNOG | 0 | 0.000 | Not matched by this tool. | |||
| HGNC | 1 | 1.500 | - | - | ||
| Hieranoid | 1 | 1.000 | - | - | ||
| Homologene | 1 | 1.000 | - | - | H62693 | |
| Inparanoid | 1 | 1.050 | 3636 | 1.000 | Inparanoid score | I299 |
| NCBI | 1 | 1.000 | - | - | ||
| OMA | 1 | 1.010 | - | - | QHG46056 | |
| OrthoDB | 1 | 1.010 | - | - | D10002at32523 | |
| OrthoFinder | 1 | 1.000 | - | - | FOG0000546 | |
| OrthoInspector | 1 | 1.000 | - | - | oto136462 | |
| orthoMCL | 1 | 0.900 | - | - | OOG6_101931 | |
| Panther | 1 | 1.100 | - | - | LDO | PTHR45623 |
| Phylome | 1 | 0.910 | - | - | ||
| SonicParanoid | 1 | 1.000 | - | - | X547 | |
| SwiftOrtho | 1 | 1.000 | - | - | ||
| TreeFam | 0 | 0.000 | Not matched by this tool. | |||
| 16 | 16.410 | |||||