| Sequence 1: | XP_005256484.1 | Gene: | CHD3 / 1107 | HGNCID: | 1918 | Length: | 2115 | Species: | Homo sapiens |
|---|---|---|---|---|---|---|---|---|---|
| Sequence 2: | XP_017169944.1 | Gene: | Chd3 / 216848 | MGIID: | 1344395 | Length: | 2111 | Species: | Mus musculus |
| Alignment Length: | 2119 | Identity: | 2040/2119 - (96%) |
|---|---|---|---|
| Similarity: | 2067/2119 - (97%) | Gaps: | 12/2119 - (0%) |
- Green bases have known domain annotations that are detailed below.
|
Human 1 MASPLRDEEEEEEEMVVSEEEEEEEEEGDEEEEEEVEAADEDDEEDDDEGVLGRGPGHDRGRDRH 65
Human 66 SPPGCHLFPPPPPPPPPLPPPPPPPPPDKDDIRLLPSALGVKKRKRGPKKQKENKPGKPRKRKKR 130
Human 131 DSEEEFGSERDEYREKSESGGSEYGTGPGRKRRRKHREKKEKKTKRRKKGEGDGGQKQVEQKSSA 195
Human 196 TLLLTWGLEDVEHVFSEEDYHTLTNYKAFSQFMRPLIAKKNPKIPMSKMMTILGAKWREFSANNP 260
Human 261 FKGSAAAVAAAAAAAAAAVAEQVSAAVSSATPIAPSG-PPALPPPPAADIQPPPIRRAKTKEGKG 324
Human 325 PGHKRRSKSPRVPDGRKKLRGKKMAPLKIKLGLLGGKRKKGGSYVFQSDEGPEPEAEESDLDSGS 389
Human 390 VHSASGRPDGPVRTKKLKRGRPGRKKKKVLGCPAVAGEEEVDGYETDHQDYCEVCQQGGEIILCD 454
Human 455 TCPRAYHLVCLDPELDRAPEGKWSCPHCEKEGVQWEAKEEEEEYEEEGEEEGEKEEEDDHMEYCR 519
Human 520 VCKDGGELLCCDACISSYHIHCLNPPLPDIPNGEWLCPRCTCPVLKGRVQKILHWRWGEPPVAVP 584
Human 585 APQQADGNPDVPPPRPLQGRSEREFFVKWVGLSYWHCSWAKELQLEIFHLVMYRNYQRKNDMDEP 649
Human 650 PPLDYGSGEDDGKSDKRKVKDPHYAEMEEKYYRFGIKPEWMTVHRIINHSVDKKGNYHYLVKWRD 714
Human 715 LPYDQSTWEEDEMNIPEYEEHKQSYWRHRELIMGEDPAQPRKYKKKKKELQGDGPPSSPTNDPTV 779
Human 780 KYETQPRFITATGGTLHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTIQTIVFLYSLYKEGHTK 844
Human 845 GPFLVSAPLSTIINWEREFQMWAPKFYVVTYTGDKDSRAIIRENEFSFEDNAIKGGKKAFKMKRE 909
Human 910 AQVKFHVLLTSYELITIDQAALGSIRWACLVVDEAHRLKNNQSKFFRVLNGYKIDHKLLLTGTPL 974
Human 975 QNNLEELFHLLNFLTPERFNNLEGFLEEFADISKEDQIKKLHDLLGPHMLRRLKADVFKNMPAKT 1039
Human 1040 ELIVRVELSPMQKKYYKYILTRNFEALNSRGGGNQVSLLNIMMDLKKCCNHPYLFPVAAMESPKL 1104
Human 1105 PSGAYEGGALIKSSGKLMLLQKMLRKLKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGI 1169
Human 1170 TGALRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQ 1234
Human 1235 ANKVMIYRFVTRASVEERITQVAKRKMMLTHLVVRPGLGSKAGSMSKQELDDILKFGTEELFKDE 1299
Human 1300 NEGENKEEDSSVIHYDNEAIARLLDRNQDATEDTDVQNMNEYLSSFKVAQYVVREEDKIEEIERE 1364
Human 1365 IIKQEENVDPDYWEKLLRHHYEQQQEDLARNLGKGKRVRKQVNYNDAAQEDQDNQSEYSVGSEEE 1429
Human 1430 DEDFDERPEGRRQSKRQLRNEKDKPLPPLLARVGGNIEVLGFNTRQRKAFLNAVMRWGMPPQDAF 1494
Human 1495 TTQWLVRDLRGKTEKEFKAYVSLFMRHLCEPGADGSETFADGVPREGLSRQQVLTRIGVMSLVKK 1559
Human 1560 KVQEFEHINGRWSMPELMPDPSADSKRSSRASSPTKTSPTTPEASATNSPCTSKPATPAPSEKGE 1624
Human 1625 GIRTPLEKEEAENQEEKPEKNSRIGEKMETEADAPSPAPSLGERLEPRKIPLEDEVPGVPGEMEP 1689
Human 1690 EPGYRGDREKSATESTPGERGEEKPLDGQEHRERPEGETGDLGKRAEDVKGDRELRPG-PRDEPR 1753
Human 1754 SNGRREEKTEKPRFMFNIADGGFTELHTLWQNEERAAISSGKLNEIWHRRHDYWLLAGIVLHGYA 1818
Human 1819 RWQDIQNDAQFAIINEPFKTEANKGNFLEMKNKFLARRFKLLEQALVIEEQLRRAAYLNLSQEPA 1883
Human 1884 HPAMALHARFAEAECLAESHQHLSKESLAGNKPANAVLHKGKGRGGPARGRAHNAASEPAGGVAE 1948
Human 1949 RHEGGRDPPASHAVPNTPHRSPPSDVRAQHPQPAGQQGHGASPHTGLPAGSLRYTSGVRGGLQRR 2013
Human 2014 TRRGPGRRRRQLQPDACRVLHHSRHQRPSSACEEGEGNGGGIGVRR--AGSEGAPSRGGDLYRRL 2076
Human 2077 TGSQACPSPRPRPRGRPPAQALGPAASPPPSPPLGPSLG 2115 |
| Gene | Sequence | Domain | Region | External ID | Identity |
|---|---|---|---|---|---|
| CHD3 | XP_005256484.1 | CHDNT | 207..259 | CDD:285335 | 51/51 (100%) |
| PHD1_CHD_II | 440..482 | CDD:277006 | 41/41 (100%) | ||
| PHD2_CHD_II | 517..559 | CDD:277007 | 41/41 (100%) | ||
| CHROMO | 568..644 | CDD:214605 | 75/75 (100%) | ||
| CHROMO | 692..744 | CDD:214605 | 47/51 (92%) | ||
| SNF2_N | 798..1094 | CDD:278600 | 295/295 (100%) | ||
| DEXDc | 815..973 | CDD:238005 | 157/157 (100%) | ||
| MPH1 | <938..1317 | CDD:224036 | 377/378 (100%) | ||
| Helicase_C | 1118..1233 | CDD:278689 | 113/114 (99%) | ||
| DUF1087 | <1371..1415 | CDD:283996 | 43/43 (100%) | ||
| DUF1086 | 1437..1576 | CDD:283992 | 138/138 (100%) | ||
| CHDCT2 | 1796..>1923 | CDD:285336 | 126/126 (100%) | ||
| Chd3 | XP_017169944.1 | CHDNT | 200..253 | CDD:369683 | 52/52 (100%) |
| PHD1_CHD_II | 434..476 | CDD:277006 | 41/41 (100%) | ||
| PHD2_CHD_II | 510..552 | CDD:277007 | 41/41 (100%) | ||
| CD1_tandem_CHD3-4_like | 557..635 | CDD:349314 | 77/77 (100%) | ||
| CD2_tandem_CHD3-4_like | 680..734 | CDD:349309 | 49/53 (92%) | ||
| PLN03142 | 771..>1325 | CDD:215601 | 552/553 (100%) | ||
| DEXHc_CHD3 | 788..1019 | CDD:350813 | 230/230 (100%) | ||
| DUF1087 | <1364..1407 | CDD:368924 | 42/42 (100%) | ||
| DUF1086 | 1430..1569 | CDD:368921 | 138/138 (100%) | ||
| PHA03169 | 1589..>1759 | CDD:223003 | 144/169 (85%) | ||
| CHDCT2 | 1790..>1917 | CDD:369684 | 126/126 (100%) |
| Tool | Simple Score | Weighted Score | Original Tool Information | |||
|---|---|---|---|---|---|---|
| BLAST Result | Score | Score Type | Cluster ID | |||
| Compara | 1 | 0.930 | - | - | C83961810 | |
| Domainoid | 1 | 1.000 | 573 | 1.000 | Domainoid score | I5649 |
| eggNOG | 1 | 0.900 | - | - | E2759_KOG0383 | |
| HGNC | 1 | 1.500 | - | - | ||
| Hieranoid | 1 | 1.000 | - | - | ||
| Homologene | 1 | 1.000 | - | - | H62693 | |
| Inparanoid | 1 | 1.050 | 3917 | 1.000 | Inparanoid score | I286 |
| Isobase | 1 | 0.950 | - | 0 | Normalized mean entropy | S1566 |
| NCBI | 1 | 1.000 | - | - | ||
| OMA | 1 | 1.010 | - | - | QHG46056 | |
| OrthoDB | 1 | 1.010 | - | - | D10002at32523 | |
| OrthoFinder | 1 | 1.000 | - | - | FOG0000546 | |
| OrthoInspector | 1 | 1.000 | - | - | oto120180 | |
| orthoMCL | 1 | 0.900 | - | - | OOG6_101931 | |
| Panther | 1 | 1.100 | - | - | LDO | PTHR45623 |
| Phylome | 1 | 0.910 | - | - | ||
| RoundUp | 0 | 0.000 | Not matched by this tool. | |||
| SonicParanoid | 1 | 1.000 | - | - | X547 | |
| SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
| TreeFam | 1 | 0.960 | - | - | ||
| 18 | 18.220 | |||||