DRSC - DRSC Integrative Ortholog Prediction Tool

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits

Protein Alignment SNRNP35 and Snrnp35

DIOPT Version :9

Sequence 1:	NP_851030.1	Gene:	SNRNP35 / 11066	HGNCID:	30852	Length:	251	Species:	Homo sapiens
Sequence 2:	NP_001014149.1	Gene:	Snrnp35 / 360803	RGDID:	1310724	Length:	244	Species:	Rattus norvegicus

Alignment Length:	246	Identity:	218/246 - (88%)
Similarity:	234/246 - (95%)	Gaps:	2/246 - (0%)

- Green bases have known domain annotations that are detailed below.

Human     6 MNDWMPIAKEYDPLKAGSIDGTDEDPHDRAVWRAMLARYVPNKGVIGDPLLTLFVARLNLQTKED 70
            |:|||||||||||||||||||||||||||||||||||||||||||.|||||||||||||.||||:
  Rat     1 MSDWMPIAKEYDPLKAGSIDGTDEDPHDRAVWRAMLARYVPNKGVTGDPLLTLFVARLNSQTKEE 65

Human    71 KLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYKEERAVIKAYRDADGLVIDQHEIFVDYELER 135
            |||||||||||||||||||||||||||||||||||||||::||||||||||||||||||||||||
  Rat    66 KLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYKEERALLKAYRDADGLVIDQHEIFVDYELER 130

Human   136 TLKGWIPRRLGGGLGGKKESGQLRFGGRDRPFRKPINLPVVKNDLYREGKRERRERSRSRERHWD 200
            ||:||||||||||||||||||||||||||||||||||||||||:.:||||||||||||||:||||
  Rat   131 TLRGWIPRRLGGGLGGKKESGQLRFGGRDRPFRKPINLPVVKNEPHREGKRERRERSRSRDRHWD 195

Human   201 SRTRDRDHDRGREKRWQEREPTRVWPDNDWERERDFRDDRIKGREKKERGK 251
            .|.|:|||||||||.||:|  .||||:|||||||:|||:|.|.|:|::|.|
  Rat   196 PRPRERDHDRGREKHWQDR--ARVWPENDWEREREFRDERAKTRDKRDRSK 244

Known Domains:

Indicated by green bases in alignment.

Gene	Sequence	Domain	Region	External ID	Identity
SNRNP35	NP_851030.1	RRM_snRNP35	53..142	CDD:240683	83/88 (94%)
Snrnp35	NP_001014149.1	RRM	<41..>126	CDD:223796	79/84 (94%)
		RRM_snRNP35	48..137	CDD:240683	83/88 (94%)
		Disordered. /evidence=ECO:0000256\|SAM:MobiDB-lite	146..244		79/99 (80%)

Information from Original Tools:

Tool	Simple Score	Weighted Score	Original Tool Information
Tool	Simple Score	Weighted Score	BLAST Result	Score	Score Type	Cluster ID
Compara	1	0.930	-	-		C83691005
Domainoid	1	1.000	225	1.000	Domainoid score	I21206
eggNOG	1	0.900	-	-		E1_COG0724
HGNC	1	1.500	-	-
Hieranoid	1	1.000	-	-
Homologene	1	1.000	-	-		H31415
Inparanoid	1	1.050	460	1.000	Inparanoid score	I12367
NCBI	1	1.000	-	-
OMA	1	1.010	-	-		QHG57187
OrthoDB	1	1.010	-	-		D1430110at2759
OrthoFinder	1	1.000	-	-		FOG0008186
OrthoInspector	1	1.000	-	-		oto131243
orthoMCL	1	0.900	-	-		OOG6_107187
Panther	1	1.100	-	-	LDO	PTHR13952
Phylome	1	0.910	-	-
SonicParanoid	1	1.000	-	-		X6149
SwiftOrtho	1	1.000	-	-
TreeFam	1	0.960	-	-
	18	18.270