DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment GTF2A1L and stnB

DIOPT Version :9

Sequence 1:NP_006863.2 Gene:GTF2A1L / 11036 HGNCID:30727 Length:478 Species:Homo sapiens
Sequence 2:NP_001036318.2 Gene:stnB / 4379834 FlyBaseID:FBgn0016975 Length:1262 Species:Drosophila melanogaster


Alignment Length:531 Identity:95/531 - (17%)
Similarity:165/531 - (31%) Gaps:191/531 - (35%)


- Green bases have known domain annotations that are detailed below.


Human    64 PLFTLQLPHSLHQTLQSSTASLV--IPAGRTLPSFTTAELGT------------------SNSSA 108
            |..|..|..::...|..:::.|:  |||.|:....:..:|.:                  |.|||
  Fly   125 PQSTQDLISTVSSQLDETSSELLGRIPATRSPSPVSMRDLHSPSPTPDSGLADLLDVSVDSGSSA 189

Human   109 NFTFPGYPIHVPAGVTLQTVSGHLYKVN------VPIMVTETSGRAGILQHPIQ----------- 156
            :          ..|:....:||....|.      ||..|........:...||:           
  Fly   190 H----------TQGIEADLISGVAGGVRLDNPFAVPTAVPNIQAAVPLPATPIKQPPRPPPPRPA 244

Human   157 --------QVFQQLGQPSVIQTSVPQLNP-----WSLQATT----------EKSQRIETVLQQPA 198
                    |...|...|.:...:.|...|     ..:..||          :..:.|.::.:||.
  Fly   245 PPRPAPPGQAAPQRPPPPLAAVNPPPAAPEADDLLDMFGTTACKPAKPPPPKSKEDILSLFEQPH 309

Human   199 ILPSGPVDRKHLENATSDILVSPG------------------NEHKIVPEALLCHQESSHYISLP 245
            :..|.|..:..|.:...|..:..|                  .:..:....|:...||:|     
  Fly   310 VPLSQPASKPDLLHDDLDETIGEGEPPEQEEPDTEQSNEISSRDEPVFTSLLIRPDESTH----- 369

Human   246 GVVFSPQVS---QTNSNVESVLSGSASMAQNLHDESLSTSPHGALHQHVTDIQLHILKNRMYGCD 307
            .:...||.:   :...|..:..||:||..:       :|:|         ||::..::: :...|
  Fly   370 DITSQPQAATGLERQVNNMAAPSGTASTQR-------ATTP---------DIEITTVED-LPRSD 417

Human   308 SVKQPRNIEEPSNIPVSEKDSNSQVDLSIRVTDDDI-------------------GEIIQVDGSG 353
            ...:|..::||      |.::..|::..   |:.:|                   ||:|..:...
  Fly   418 DEDEPEAMQEP------ETETKPQIEPD---TEPEIVSEHSPPTERLVTQAALVDGELIAAEPEP 473

Human   354 ---DTSSNEEIGSTRDADENEFLGNIDGGDLKVPEEEADSISNEDS------ATNSSDN--EDPQ 407
               ||..:..:.|:.....|.|..         |:||..:.:...:      |.|..|:  |.|:
  Fly   474 EEMDTGLDFPLASSGQLSANPFAS---------PDEEEPNFAPMPAAVANIFAVNDPDSQMETPK 529

Human   408 -----VNIVEEDPLNSGDDVSEQDVPDLFDTDNVIVCQYDKIHRSKNKWKFYLKDGVMCFGGRDY 467
                 .||...|             ||.||   ....::|.:    .|....:.||   |||...
  Fly   530 APSHTANIFASD-------------PDEFD---AFSAKFDSV----KKDNISIMDG---FGGSGA 571

Human   468 VFAKAIGDAEW 478
            :.... ||| |
  Fly   572 ITPTG-GDA-W 580

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GTF2A1LNP_006863.2 TFIIA 10..478 CDD:308659 94/529 (18%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 309..427 26/152 (17%)
stnBNP_001036318.2 Trypan_PARP 377..496 CDD:114603 24/144 (17%)
AP_MHD_Cterm 897..1219 CDD:299401
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1533
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
11.030

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