DRSC/TRiP Functional Genomics Resources

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Protein Alignment RAB40B and Rab9Db

DIOPT Version :10

Sequence 1:NP_006813.1 Gene:RAB40B / 10966 HGNCID:18284 Length:278 Species:Homo sapiens
Sequence 2:NP_572642.1 Gene:Rab9Db / 31993 FlyBaseID:FBgn0030221 Length:197 Species:Drosophila melanogaster


Alignment Length:164 Identity:60/164 - (36%)
Similarity:83/164 - (50%) Gaps:3/164 - (1%)


- Green bases have known domain annotations that are detailed below.


Human    11 YDFLLKFLLVGDSDVGKGEILASLQDGAAESPYGHPAGIDYKTTTI-LLDGRRVK-LQLWDTSGQ 73
            ||...|.:::|||.|||..:|....|......:....|:|.:..:: ..|.|..: ||:||||..
  Fly     4 YDNPFKIIILGDSGVGKTCLLMRFSDNQFTERHRVTVGMDRRECSVEFADWRMGRMLQVWDTSDD 68

Human    74 GRFCTIFRSYSRGAQGVILVYDIANRWSFDGIDRWIKEIDEHAPG-VPKILVGNRLHLAFKRQVP 137
            .||..:..:..|.|.|::|||||.:..||..||.|:|||....|. |..:||||:......|||.
  Fly    69 ERFKLLKATQCRSAHGILLVYDITSSKSFQNIDGWMKEIRRLCPDKVTVLLVGNKSDDPNHRQVS 133

Human   138 TEQAQAYAERLGVTFFEVSPLCNFNITESFTELA 171
            ..|...||.|..:.|.|||.....|:.:.|:.||
  Fly   134 MAQGFNYAHRQSICFEEVSAKSGRNVYDIFSSLA 167

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RAB40BNP_006813.1 Rab40 9..278 CDD:133321 60/164 (37%)
Switch-I. /evidence=ECO:0000255|PROSITE-ProRule:PRU00753 41..49 0/7 (0%)
Switch-II. /evidence=ECO:0000255|PROSITE-ProRule:PRU00753 72..88 3/15 (20%)
SOCS_Rab40 187..229 CDD:239711
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 242..278
Rab9DbNP_572642.1 Rab 8..167 CDD:206640 56/158 (35%)
Blue background indicates that the domain is not in the aligned region.

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