Protein Alignment CPSF4 and Cpsf4

DIOPT Version :9

• Sequence 1: XP_011514057.1
• Gene: CPSF4 / 10898
• HGNCID: 2327
• Length: 274
• Species: Homo sapiens
• Sequence 2: XP_006248931.1
• Gene: Cpsf4 / 304277
• RGDID: 620440
• Length: 269
• Species: Rattus norvegicus
• Alignment Length: 274
• Identity: 266/274 - (97%)
• Similarity: 266/274 - (97%)
• Gaps: 5/274 - (1%)

Human     1 MQEIIASVDHIKFDLEIAVEQQLGAQPLPFPGMDKSGAAVCEFFLKAACGKGGMCPFRHISGEKT 65
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
  Rat     1 MQEIIASVDHIKFDLEIAVEQQLGAQPLPFPGMDKSGAAVCEFFLKAACGKGGMCPFRHISGEKT 65

Human    66 VVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSKFGECSNKECPFLHIDPESKIKDCPWYDRG 130
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
  Rat    66 VVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSKFGECSNKECPFLHIDPESKIKDCPWYDRG 130

Human   131 FCKHGPLCRHRHTRRVICVNYLVGFCPEGPSCKFMQLLVTSPRFELPMGTTEQPPLPQQTQPPAK 195
            |||||||||||||||||||||||||||||||||||.     ||||||||||||||||||||||.|
  Rat   131 FCKHGPLCRHRHTRRVICVNYLVGFCPEGPSCKFMH-----PRFELPMGTTEQPPLPQQTQPPTK 190

Human   196 QSNNPPLQRSSSLIQLTSQNSSPNQQRTPQVIGVMQSQNSSAGNRGPRPLEQVTCYKCGEKGHYA 260
            |||||||||||||||||||||||||||.|||||||||||||||||||||||||||||||||||||
  Rat   191 QSNNPPLQRSSSLIQLTSQNSSPNQQRAPQVIGVMQSQNSSAGNRGPRPLEQVTCYKCGEKGHYA 255

Human   261 NRCTKGHLAFLSGQ 274
            ||||||||||||||
  Rat   256 NRCTKGHLAFLSGQ 269

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
CPSF4	XP_011514057.1	YTH1	<25..>161	CDD:227416	135/135 (100%)
		COG5222	<231..>263	CDD:227547	31/31 (100%)
Cpsf4	XP_006248931.1	YTH1	<25..211	CDD:227416	183/190 (96%)
		COG5222	<198..>258	CDD:227547	58/59 (98%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	1	0.930	-	-		C83677177
Domainoid	1	1.000	184	1.000	Domainoid score	I26520
eggNOG	1	0.900	-	-		E1_COG5084
HGNC	1	1.500	-	-
Hieranoid	1	1.000	-	-
Homologene	1	1.000	-	-		H38216
Inparanoid	1	1.050	518	1.000	Inparanoid score	I11459
NCBI	1	1.000	-	-
OMA	1	1.010	-	-		QHG49855
OrthoDB	1	1.010	-	-		D1472764at2759
OrthoFinder	1	1.000	-	-		FOG0002750
OrthoInspector	1	1.000	-	-		oto131513
orthoMCL	1	0.900	-	-		OOG6_103251
Panther	1	1.100	-	-	LDO	PTHR23102
Phylome	1	0.910	-	-
SonicParanoid	1	1.000	-	-		X2133
SwiftOrtho	1	1.000	-	-
TreeFam	1	0.960	-	-
	18	18.270