DRSC/TRiP Functional Genomics Resources

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Protein Alignment CPSF4 and yth1

DIOPT Version :10

Sequence 1:XP_011514057.1 Gene:CPSF4 / 10898 HGNCID:2327 Length:274 Species:Homo sapiens
Sequence 2:NP_592962.1 Gene:yth1 / 2541506 PomBaseID:SPAC227.08C Length:170 Species:Schizosaccharomyces pombe


Alignment Length:148 Identity:68/148 - (45%)
Similarity:91/148 - (61%) Gaps:29/148 - (19%)


- Green bases have known domain annotations that are detailed below.


Human    61 SGEK--TVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSKFGECSN-KECPFLHIDPESKIK 122
            ||.|  :||||||||||||||:||:|||||::.|||.|:||::.|.||| :||.:||:||..::.
pombe    45 SGSKMGSVVCKHWLRGLCKKGEQCDFLHEYNLKKMPPCHFYAERGWCSNGEECLYLHLDPSKQVG 109

Human   123 DCPWYDRGFCKHGPLCRHRHTRRV-ICVNYLVGFCPEGPSCKFMQLLVTSPRFELPMGTTEQPPL 186
            .|.||:.|||..||:||.:|.|:. .|..||.||||.||:|....                    
pombe   110 VCAWYNMGFCPLGPICRGKHVRKPRPCPKYLAGFCPLGPNCPDAH-------------------- 154

Human   187 PQQTQPPAKQSNNPPLQR 204
            |:.::||     :||.:|
pombe   155 PKHSEPP-----HPPQKR 167

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CPSF4XP_011514057.1 YTH1 <25..>161 CDD:227416 60/103 (58%)
COG5222 <231..>263 CDD:227547
yth1NP_592962.1 YTH1 1..170 CDD:227416 68/148 (46%)
Blue background indicates that the domain is not in the aligned region.

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