DRSC/TRiP Functional Genomics Resources

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Protein Alignment GRAP and shd1

DIOPT Version :10

Sequence 1:NP_006604.1 Gene:GRAP / 10750 HGNCID:4562 Length:217 Species:Homo sapiens
Sequence 2:NP_594213.1 Gene:shd1 / 2542338 PomBaseID:SPAC16E8.01 Length:1420 Species:Schizosaccharomyces pombe


Alignment Length:49 Identity:17/49 - (34%)
Similarity:26/49 - (53%) Gaps:0/49 - (0%)


- Green bases have known domain annotations that are detailed below.


Human     6 LYSFQATESDELAFNKGDTLKILNMEDDQNWYKAELRGVEGFIPKNYIR 54
            ||.|.|..:|||.......:.|:|.....:|:|..:.|.||.:|.|:|:
pombe   516 LYDFIAEAADELTVKANMRVVIVNDTASSDWWKCSVDGKEGVVPSNFIK 564

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GRAPNP_006604.1 SH3_GRAP_N 2..55 CDD:212881 17/49 (35%)
SH2_Grb2_like 56..150 CDD:199828
SH3_GRAP_C 162..214 CDD:212884
shd1NP_594213.1 SH3_Sla1p_1 9..75 CDD:212707
SH3_Sla1p_2 84..134 CDD:212708
SH3_Sla1p_3 511..565 CDD:212709 17/49 (35%)
SHD1 641..706 CDD:427630
SAM_SLA1_fungal 796..857 CDD:188931
PRK10263 <918..>1068 CDD:236669
Med15 1004..>1407 CDD:312941
DUF1720 1044..1117 CDD:369766
DUF1720 1140..1221 CDD:369766
Blue background indicates that the domain is not in the aligned region.

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