DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CORIN and corin

DIOPT Version :10

Sequence 1:NP_006578.2 Gene:CORIN / 10699 HGNCID:19012 Length:1042 Species:Homo sapiens
Sequence 2:XP_021325728.2 Gene:corin / 100320926 ZFINID:ZDB-GENE-060224-3 Length:1036 Species:Danio rerio


Alignment Length:1054 Identity:628/1054 - (59%)
Similarity:765/1054 - (72%) Gaps:62/1054 - (5%)


- Green bases have known domain annotations that are detailed below.


Human    30 MGNGCSQKLATANLLRFLLLVLIPCICALVLLLVILLSYVGTL---------------------- 72
            ||...:........||.||.:|:||:|.|:.:.|:||:..|..                      
Zfish     2 MGEAFTHTQRCGKHLRLLLFILLPCVCVLICVCVLLLTLTGLFGNNGLLDAGAFVSIATFPPPAF 66

Human    73 ----QKVYFKSNGSEPLVTDGEIQGSDVILTNTIY--NQSTVVSTAHPDQHVPAWTTDASL---- 127
                .::....||:..:.||..:|..     :|::  ...|..|.:.....|..||:.:::    
Zfish    67 NDSDSRLMTADNGTVAVPTDAPLQWD-----STLWMPRADTSPSASPTAVSVDWWTSTSTVTSLT 126

Human   128 --PGDQSHRNTSACMNITHSQCQMLPYHATLTPL-LSVVRNMEMEKFLKFFTYLHRLSCYQHIML 189
              ||        .|.:||.|||.||||:.:...: .|||::.|::.|||||:||.|||||:||||
Zfish   127 AEPG--------ICSDITESQCNMLPYNQSGVMVGRSVVKSSELQMFLKFFSYLSRLSCYRHIML 183

Human   190 FGCTLAFPECIIDGDDSHGLLPCRSFCEAAKEGCESVLGMVNYSWPDFLRCSQFRNQTESS-NVS 253
            |||::|.|:||...|....:|||:||||||:||||.||.|.|.|||:|||||||.|.:.:: ..|
Zfish   184 FGCSIALPQCISHRDGRTLVLPCQSFCEAAREGCEPVLQMFNASWPEFLRCSQFSNNSGTAVENS 248

Human   254 RICFSPQQENGKQLLCGRGENFLCASGICIPGKLQCNGYNDCDDWSDEAHCNCSENLFHCHTGKC 318
            .:|::|:...||..:||..::||||:|||:|.||.||||||||||||||.|.|:::...|.||:|
Zfish   249 ALCYTPKHARGKLSVCGGNDHFLCATGICVPLKLVCNGYNDCDDWSDEADCTCADSQHLCGTGRC 313

Human   319 LNYSLVCDGYDDCGDLSDEQNCDCNPTTEHRCGDGRCIAMEWVCDGDHDCVDKSDEVNCSCHSQG 383
            :|..|:||||||||||||||||.|:...||.|||||||..||:|||||||:|||||:||||.|||
Zfish   314 INSDLLCDGYDDCGDLSDEQNCVCDELEEHHCGDGRCIPREWLCDGDHDCLDKSDELNCSCKSQG 378

Human   384 LVECRNGQCIPSTFQCDGDEDCKDGSDEENCSV--IQTSCQEGDQRCLYNPCLDSCGGSSLCDPN 446
            ||||:|.|||||.|:|||::|||||||||||:.  ||..|..|...|....|   |.|::.||..
Zfish   379 LVECKNKQCIPSAFRCDGEDDCKDGSDEENCTQQHIQGLCPSGQSGCSSTSC---CPGNTSCDLR 440

Human   447 NSLNNCSQCEPITLELCMNLPYNSTSYPNYFGHRTQKEASISWESSLFPALVQTNCYKYLMFFSC 511
            .:.||||.||||:||:|||||||:|.:|||.||::|||.|:||||||||||||||||||||||:|
Zfish   441 TAGNNCSDCEPISLEICMNLPYNTTRFPNYLGHQSQKETSVSWESSLFPALVQTNCYKYLMFFAC 505

Human   512 TILVPKCDVNTGEHIPPCRALCEHSKERCESVLGIVGLQWPEDTDCSQFPEENSDNQTCLMPDEY 576
            |:|||.||..|.:.:||||:||.:||:|||||||||||||||||||:|||||...|.:||:||..
Zfish   506 TVLVPMCDPVTQQRVPPCRSLCRNSKDRCESVLGIVGLQWPEDTDCAQFPEEGQANSSCLLPDPD 570

Human   577 VEECSPSHFKCRSGQCVLASRRCDGQADCDDDSDEENCGCKERDLWECPSNKQCLKHTVICDGFP 641
            |.||||||||||||:|||:|:||||..|||||||||.|||.||.|||||.:|.|:.|::||||||
Zfish   571 VNECSPSHFKCRSGRCVLSSKRCDGHTDCDDDSDEEMCGCLERGLWECPGDKSCIPHSMICDGFP 635

Human   642 DCPDYMDEKNCSFCQDDELECANHACVSRDLWCDGEADCSDSSDEWDCVTLSINVNSSSFLMVHR 706
            ||..:.||.|||.|...||||.||.||.|.|||||...||||||||:||:||    ....|:|::
Zfish   636 DCSQHEDENNCSACSSHELECNNHECVHRALWCDGRRHCSDSSDEWNCVSLS----DEGSLLVYK 696

Human   707 AATEHHVCADGWQEILSQLACKQMGLGEPSVTKLIQEQE---KEPRWLTLHSNWESLNGTTLHEL 768
            |..|:|||||||....|.:.|.|||||.|..|..:.:..   :..|||.:..:|...|...|..|
Zfish   697 AGLEYHVCADGWSPNHSSVTCTQMGLGSPLSTDAMLDVSPVVRRKRWLHVDPDWSPENMLPLQGL 761

Human   769 L-VNGQSCESRSKISLLCTKQDCGRRPAARMNKRILGGRTSRPGRWPWQCSLQSEPSGHICGCVL 832
            | ..||||:|..||||.||:.:||||||||:.||||||||||||||||||||||:||||||||||
Zfish   762 LEKRGQSCQSYKKISLQCTRDECGRRPAARLVKRILGGRTSRPGRWPWQCSLQSDPSGHICGCVL 826

Human   833 IAKKWVLTVAHCFEGRENAAVWKVVLGINNLDHPSVFMQTRFVKTIILHPRYSRAVVDYDISIVE 897
            |..||.|||||||||||:|.|||||||||||||||.:||||.||:||:|.||:|||||||||::|
Zfish   827 IGNKWALTVAHCFEGRESADVWKVVLGINNLDHPSPYMQTRRVKSIIVHSRYNRAVVDYDISVLE 891

Human   898 LSEDISETGYVRPVCLPNPEQWLEPDTYCYITGWGHMGNKMPFKLQEGEVRIISLEHCQSYFDMK 962
            |..::..|.||||||||...|..:||.||:||||||:||:||||||||||||||:..||||||||
Zfish   892 LESEVLVTSYVRPVCLPRHGQLPKPDKYCHITGWGHVGNRMPFKLQEGEVRIISVSQCQSYFDMK 956

Human   963 TITTRMICAGYESGTVDSCMGDSGGPLVCEKPGGRWTLFGLTSWGSVCFSKVLGPGVYSNVSYFV 1027
            |||:||:|||||:||:||||||||||||||:..|.|:|:|||||||||||||||||||:||::|.
Zfish   957 TITSRMLCAGYEAGTIDSCMGDSGGPLVCEEDDGHWSLYGLTSWGSVCFSKVLGPGVYANVTHFT 1021

Human  1028 EWIKRQIYIQTFLL 1041
            |||:||||::||.|
Zfish  1022 EWIERQIYLRTFNL 1035

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CORINNP_006578.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..25
DDNN motif 26..29
CRD_corin_1 135..263 CDD:143554 69/129 (53%)
LDLa 269..304 CDD:238060 26/34 (76%)
LDLa 306..340 CDD:238060 21/33 (64%)
Ldl_recept_a 347..377 CDD:395011 23/29 (79%)
LDLa 387..414 CDD:238060 20/26 (77%)
CRD_corin_2 454..575 CDD:143579 89/120 (74%)
LDLa 580..614 CDD:238060 28/33 (85%)
LDLa 655..689 CDD:238060 23/33 (70%)
SR 690..786 CDD:214555 40/99 (40%)
Tryp_SPc 802..1033 CDD:238113 180/230 (78%)
corinXP_021325728.2 None
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.