| Sequence 1: | NP_006556.1 | Gene: | CTCF / 10664 | HGNCID: | 13723 | Length: | 727 | Species: | Homo sapiens |
|---|---|---|---|---|---|---|---|---|---|
| Sequence 2: | XP_006255598.1 | Gene: | Ctcf / 83726 | RGDID: | 621344 | Length: | 738 | Species: | Rattus norvegicus |
| Alignment Length: | 738 | Identity: | 721/738 - (97%) |
|---|---|---|---|
| Similarity: | 723/738 - (97%) | Gaps: | 11/738 - (1%) |
- Green bases have known domain annotations that are detailed below.
|
Human 1 MEGDAVEAIVEESETFIKGKERKTYQRRREGGQEEDACHLPQNQTDGGEVVQDVNSSVQMVMMEQ 65
Human 66 LDPTLLQMKTEVMEGTVAPEAEAAVDDTQIITLQVVNMEEQPINIGELQLVQVPVPVTVPVATTS 130
Human 131 VEELQGAYENEVSKEGLAESEPMICHTLPLPEGFQVVKVGANGEVETLEQGELPPQEDPSWQKDP 195
Human 196 DYQPPAKKTKKTKKSKLRYTEEGKDVDVSVYDFEEEQQEGLLSEVNAEKVVGNMKPPKPTKIKKK 260
Human 261 GVKKTFQCELCSYTCPRRSNLDRHMKSHTDERPHKCHLCGRAFRTVTLLRNHLNTHTGTRPHKCP 325
Human 326 DCDMAFVTSGELVRHRRYKHTHEKPFKCSMCDYASVEVSKLKRHIRSHTGERPFQCSLCSYASRD 390
Human 391 TYKLKRHMRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVH 455
Human 456 LRKQHSYIEQGKKCRYCDAVFHERYALIQHQKSHKNEKRFKCDQCDYACRQERHMIMHKRTHTGE 520
Human 521 KPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNCAGPDGVEG 585
Human 586 ENGGETKKSKRGRKRKMRSKKEDSSDS-ENAEPDLDDNEDEEEPAVEIEPEPE----------PQ 639
Human 640 PVTPAPPPAKKRRGRPPGRTNQPKQNQPTAIIQVEDQNTGAIENIIVEVKKEPDAEPAEGEEEEA 704
Human 705 QPAATDAPNGDLTPEMILSMMDR 727 |
| Gene | Sequence | Domain | Region | External ID | Identity |
|---|---|---|---|---|---|
| CTCF | NP_006556.1 | Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 180..211 | 30/30 (100%) | |
| zf-H2C2_5 | 266..289 | CDD:404746 | 22/22 (100%) | ||
| C2H2 Zn finger | 268..288 | CDD:275368 | 19/19 (100%) | ||
| zf-H2C2_2 | 280..305 | CDD:463886 | 24/24 (100%) | ||
| C2H2 Zn finger | 296..316 | CDD:275368 | 19/19 (100%) | ||
| zf-H2C2_2 | 309..333 | CDD:463886 | 23/23 (100%) | ||
| C2H2 Zn finger | 324..347 | CDD:275368 | 22/22 (100%) | ||
| zf-H2C2_5 | 351..375 | CDD:404746 | 23/23 (100%) | ||
| C2H2 Zn finger | 353..373 | CDD:275368 | 19/19 (100%) | ||
| COG5048 | <366..500 | CDD:227381 | 133/133 (100%) | ||
| C2H2 Zn finger | 381..401 | CDD:275368 | 19/19 (100%) | ||
| C2H2 Zn finger | 409..426 | CDD:275368 | 16/16 (100%) | ||
| C2H2 Zn finger | 439..457 | CDD:275368 | 17/17 (100%) | ||
| C2H2 Zn finger | 469..489 | CDD:275368 | 19/19 (100%) | ||
| C2H2 Zn finger | 497..517 | CDD:275368 | 19/19 (100%) | ||
| zf-H2C2_2 | 509..534 | CDD:463886 | 24/24 (100%) | ||
| C2H2 Zn finger | 525..546 | CDD:275368 | 20/20 (100%) | ||
| C2H2 Zn finger | 557..573 | CDD:275368 | 15/15 (100%) | ||
| Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 573..677 | 101/114 (89%) | |||
| Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 689..717 | 24/27 (89%) | |||
| Ctcf | XP_006255598.1 | zf-H2C2_5 | 266..289 | CDD:404746 | 22/22 (100%) |
| C2H2 Zn finger | 268..288 | CDD:275368 | 19/19 (100%) | ||
| zf-H2C2_2 | 280..305 | CDD:463886 | 24/24 (100%) | ||
| C2H2 Zn finger | 296..316 | CDD:275368 | 19/19 (100%) | ||
| zf-H2C2_2 | 309..333 | CDD:463886 | 23/23 (100%) | ||
| C2H2 Zn finger | 324..347 | CDD:275368 | 22/22 (100%) | ||
| zf-H2C2_5 | 351..375 | CDD:404746 | 23/23 (100%) | ||
| C2H2 Zn finger | 353..373 | CDD:275368 | 19/19 (100%) | ||
| COG5048 | <366..500 | CDD:227381 | 133/133 (100%) | ||
| C2H2 Zn finger | 381..401 | CDD:275368 | 19/19 (100%) | ||
| C2H2 Zn finger | 409..426 | CDD:275368 | 16/16 (100%) | ||
| C2H2 Zn finger | 439..457 | CDD:275368 | 17/17 (100%) | ||
| C2H2 Zn finger | 469..489 | CDD:275368 | 19/19 (100%) | ||
| C2H2 Zn finger | 497..517 | CDD:275368 | 19/19 (100%) | ||
| zf-H2C2_2 | 509..534 | CDD:463886 | 24/24 (100%) | ||
| C2H2 Zn finger | 525..546 | CDD:275368 | 20/20 (100%) | ||
| C2H2 Zn finger | 557..573 | CDD:275368 | 15/15 (100%) |