DRSC/TRiP Functional Genomics Resources

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Protein Alignment CTCF and Y37F4.6

DIOPT Version :10

Sequence 1:NP_006556.1 Gene:CTCF / 10664 HGNCID:13723 Length:727 Species:Homo sapiens
Sequence 2:NP_001367632.2 Gene:Y37F4.6 / 259399 WormBaseID:WBGene00021387 Length:517 Species:Caenorhabditis elegans


Alignment Length:398 Identity:73/398 - (18%)
Similarity:133/398 - (33%) Gaps:130/398 - (32%)


- Green bases have known domain annotations that are detailed below.


Human   204 TKKTKKSKLRYTEEGKDVDVSVYD-------------FEEEQQEGLLSEVNAEKVVGNMKPPKPT 255
            |..:||:.......|.....|||.             |||.:...|:.      :...|....|.
 Worm    75 TTSSKKAPEASQNPGPSSSFSVYPQVAPAKIKRQLDRFEESRLWDLIG------LTPKMYEKLPA 133

Human   256 KIKKKGVKKTFQCELCSYTCPRRSNLDRHM-----------------KSHTDERPHKCHLCGRAF 303
            ::||. .|.....:.|.|    |.:..||.                 :::.|:|           
 Worm   134 ELKKV-TKNRLVFKKCIY----RLHNTRHFQVPLVKRGGIRKEDVLKQNYEDDR----------- 182

Human   304 RTVTLLRNHLNTHTGTRPHKCP--DCDMAFVTSGELVRHRRYKHTHEKPFKCSMCDYASVEVSKL 366
               .||:.:       :.:.||  ||..:|....::..|..:.|...|.|.|             
 Worm   183 ---KLLKKN-------QAYPCPWDDCPHSFQDPQDMRIHYMFDHESVKLFCC------------- 224

Human   367 KRHIRSHTGERPFQCSLCSYASRDTYKLKRHMRT-----HSGEKPYECYICHARFTQSGTMKMHI 426
                    |.|        :.:.|:: |:.:.:|     |:.....||:.|..|...:.|...| 
 Worm   225 --------GNR--------FENYDSF-LEHYTQTLNGTGHATWMARECWGCGIRHVDAVTFYQH- 271

Human   427 LQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHSYIEQGKK----CRYCDAVFHERYALIQHQK 487
            .::....:..|.||  |.:...:.:..|.: ..|.:|...|.    |.  |||:..|.::.:..:
 Worm   272 AERCGCQIHPFACP--DPLCGIRFEYLVDV-IDHFFIWHDKAGSIVCN--DAVYSTRESIEEDLQ 331

Human   488 ---------SHKNEKRFKCDQCDYACRQERHMIMHKRTHTGEKPYA--------CSHCDK---TF 532
                     ::..:..:||..|:.....::|...|..||. |.|:.        |..|::   .|
 Worm   332 LFDDGQLVVNYPLKAMYKCGLCNIQFAADQHYREHVATHI-ENPHLWLVPTILYCVKCNRKNCRF 395

Human   533 RQKQLLDM 540
            ::.:|:::
 Worm   396 QRTRLIEL 403

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CTCFNP_006556.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 180..211 3/6 (50%)
zf-H2C2_5 266..289 CDD:404746 5/39 (13%)
C2H2 Zn finger 268..288 CDD:275368 5/36 (14%)
zf-H2C2_2 280..305 CDD:463886 4/41 (10%)
C2H2 Zn finger 296..316 CDD:275368 2/19 (11%)
zf-H2C2_2 309..333 CDD:463886 6/25 (24%)
C2H2 Zn finger 324..347 CDD:275368 7/24 (29%)
zf-H2C2_5 351..375 CDD:404746 2/23 (9%)
C2H2 Zn finger 353..373 CDD:275368 1/19 (5%)
COG5048 <366..500 CDD:227381 27/151 (18%)
C2H2 Zn finger 381..401 CDD:275368 3/24 (13%)
C2H2 Zn finger 409..426 CDD:275368 4/16 (25%)
C2H2 Zn finger 439..457 CDD:275368 4/17 (24%)
C2H2 Zn finger 469..489 CDD:275368 5/28 (18%)
C2H2 Zn finger 497..517 CDD:275368 4/19 (21%)
zf-H2C2_2 509..534 CDD:463886 9/35 (26%)
C2H2 Zn finger 525..546 CDD:275368 4/19 (21%)
C2H2 Zn finger 557..573 CDD:275368
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 573..677
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 689..717
Y37F4.6NP_001367632.2 None
Blue background indicates that the domain is not in the aligned region.

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