DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CELF1 and bru1

DIOPT Version :9

Sequence 1:NP_001317201.1 Gene:CELF1 / 10658 HGNCID:2549 Length:514 Species:Homo sapiens
Sequence 2:NP_001260403.1 Gene:bru1 / 34648 FlyBaseID:FBgn0000114 Length:810 Species:Drosophila melanogaster


Alignment Length:562 Identity:256/562 - (45%)
Similarity:321/562 - (57%) Gaps:136/562 - (24%)


- Green bases have known domain annotations that are detailed below.


Human    17 CSLNSSPVSK---------KMNGTLDHPD-QPDLDAIKMFVGQVPRTWSEKDLRELFEQYGAVYE 71
            ||.|.:.|:.         ..:.|:.:.: :||.|.|||||||||::..|..|||:||:||||:.
  Fly   321 CSANRNVVAMVDDDACFRLDTDATVTYGEKEPDPDNIKMFVGQVPKSMDESQLREMFEEYGAVHS 385

Human    72 INVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQMKPADSEKNNAVEDRK 136
            ||||||::..  .||||||||||||.|||:||:||||:|.|.||:|||||||||||..|   :||
  Fly   386 INVLRDKATG--ISKGCCFVTFYTRHAALKAQDALHNVKTLNGMYHPIQMKPADSENRN---ERK 445

Human   137 LFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIK-AMHQAQT 200
            ||:||::||..|||:|.:|...|.||||.:||..:|.|:|||||||.|:..|.:||| .:.|.:.
  Fly   446 LFVGMLNKKLNENDVRKLFEVHGAIEECTVLRDQNGQSKGCAFVTFATKHAAISAIKVTLSQNKI 510

Human   201 MEGCSSPMVVKFADTQKDKEQKRMAQQLQQQMQQISAASVWGNLA-------------------- 245
            ||||:||:|||||||||:||||:: ||:|        |::| |||                    
  Fly   511 MEGCTSPLVVKFADTQKEKEQKKI-QQIQ--------ANLW-NLASNINIPLGQTATSVTTPILP 565

Human   246 ----------GLNTLGP---------QYLALYLQLLQQ-----TASSGNLNTLSSLHPMGGLNAM 286
                      |.:.:.|         |.:.|..||||.     ...|.:....|::...|.|..|
  Fly   566 NPPQQPSPVLGADAITPASIQLLQQLQAVGLQHQLLQALTGLGAQQSSSATDTSAVAAAGLLTPM 630

Human   287 QLQNLAALA---------AAASAAQNTPSGTNALTTSSSPLSVLTSSAGSSPSSSSSNSVNPIAS 342
            .:|||||:|         |||:||..|..|:..||.:::.|       .|.|        ||:||
  Fly   631 TVQNLAAIAAMTQPSLSNAAAAAAAATSPGSAQLTNTAALL-------WSDP--------NPMAS 680

Human   343 LGALQTLAGATAGLNVGSLAGMAALNGGLGSSGLSNGTGSTMEALTQAYSGIQQYAAAALPTLYN 407
             ..:.|.||..   ..||            :|.||          |...:.:...||||      
  Fly   681 -AYMSTAAGLP---QFGS------------ASALS----------TSPLASVALSAAAA------ 713

Human   408 QNLLTQQSIGAAGSQKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCF 472
                     .|||.|.|||||.|||||||||||.|.||...|:|||||:||||||||||:|||||
  Fly   714 ---------AAAGKQIEGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCF 769

Human   473 GFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRSKNDSKPY 514
            ||||:|||.|||.||::|||||:|.||||||||:.| |||||
  Fly   770 GFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQLKKPK-DSKPY 810

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CELF1NP_001317201.1 RRM1_CELF1_2_Bruno 42..125 CDD:410040 57/82 (70%)
RRM2_CELF1_2 134..214 CDD:410042 45/80 (56%)
RRM3_CELF1_2 422..513 CDD:241082 70/90 (78%)
bru1NP_001260403.1 RRM1_CELF1_2_Bruno 356..437 CDD:241075 57/82 (70%)
ELAV_HUD_SF 359..808 CDD:273741 242/520 (47%)
RRM2_Bruno_like 443..524 CDD:241080 45/80 (56%)
RRM3_Bruno_like 722..800 CDD:241084 61/77 (79%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C165146318
Domainoid 1 1.000 97 1.000 Domainoid score I7253
eggNOG 1 0.900 - - E1_KOG0144
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 405 1.000 Inparanoid score I1906
Isobase 1 0.950 - 0 Normalized mean entropy S2786
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1209165at2759
OrthoFinder 1 1.000 - - FOG0000286
OrthoInspector 1 1.000 - - otm41419
orthoMCL 1 0.900 - - OOG6_106127
Panther 1 1.100 - - O PTHR24012
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2990
SonicParanoid 1 1.000 - - X208
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
User_Submission 00.000 Not matched by this tool.
1514.740

Return to query results.
Submit another query.