DRSC/TRiP Functional Genomics Resources

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Protein Alignment TRIM16 and nhl-3

DIOPT Version :10

Sequence 1:NP_006461.3 Gene:TRIM16 / 10626 HGNCID:17241 Length:564 Species:Homo sapiens
Sequence 2:NP_001040817.2 Gene:nhl-3 / 173452 WormBaseID:WBGene00003599 Length:698 Species:Caenorhabditis elegans


Alignment Length:330 Identity:65/330 - (19%)
Similarity:108/330 - (32%) Gaps:117/330 - (35%)


- Green bases have known domain annotations that are detailed below.


Human    77 CDFCL----DDTRRVKAV----KSCLTCMVNYCEEHLQPHQVNIKLQSHLLTEPVKDHNWRYCPA 133
            |..||    .:||:.|.:    ..||.|:....|  |.|.           |:|         |.
 Worm    25 CSTCLYTYDGNTRKPKLLPCSHSVCLFCVTQLAE--LSPE-----------TQP---------PT 67

Human   134 HHSPLSAFCCP--------------------------------------DQQCICQDC------- 153
            ...||....||                                      ||...|:.|       
 Worm    68 LRCPLCREVCPIPAGGVILFPAAFFINQLLDVMQIQRKDVVPSCSNHPTDQLLYCETCDLVFCEN 132

Human   154 CQEH------SGHTIVSLD-AARRDKE-----AELQCTQLDLERKLKLNENAISRLQANQKSVL- 205
            ||:.      ..||:|.|. |.:|..|     |:.:...|| :..:.:|.. |.:|..|...:: 
 Worm   133 CQDSVVNKKCDEHTVVPLSIAIKRMSEIVVYRAKGRLRALD-DAHVTVNRE-IVQLDGNVDKIVE 195

Human   206 ---VSVSEVKAVAEMQFGELLAAVRKAQANVMLFLEEKEQAALSQANGIKAHLEYRSAEMEKSKQ 267
               .::.||..:.|.:...|:..||..:       :||.:....|...|:...:....|:|..|.
 Worm   196 QINAAIQEVSNLVENRRRVLIETVRVRR-------DEKRKVLKDQLEVIQDEKKKLQKELESCKM 253

Human   268 ELERMAAISNTVQFLEEYCKFKNTEDITFPSVYVGLKDKLSGIRKVITESTVHLIQLLENYKKKL 332
            ::..||          ...|..|::|.....:   ::.:.:...::.|.|.    |:|.:.::.|
 Worm   254 DIRSMA----------RQLKDGNSDDNWQRRI---IEPRENAFLRINTNSE----QMLVDVERNL 301

Human   333 QEFSK 337
            .||.|
 Worm   302 NEFGK 306

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
TRIM16NP_006461.3 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..69
Bbox1_TRIM16 75..122 CDD:380897 13/52 (25%)
Bbox_SF 129..173 CDD:469587 17/95 (18%)
CusB_dom_1 <164..>283 CDD:481212 26/128 (20%)
SPRY_PRY_TRIM16 365..546 CDD:293948
nhl-3NP_001040817.2 RING-HC_PML_C-V 19..76 CDD:438241 17/72 (24%)
Bbox_SF 111..>134 CDD:469587 4/22 (18%)
MukB <164..>310 CDD:442330 33/169 (20%)
IG_FLMN <344..428 CDD:214720
NHL 452..696 CDD:302697
NHL repeat 489..528 CDD:271331
NHL repeat 530..570 CDD:271331
NHL repeat 572..610 CDD:271331
NHL repeat 621..659 CDD:271331
NHL repeat 670..695 CDD:271331
Blue background indicates that the domain is not in the aligned region.

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