DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment POMT1 and pomt1

DIOPT Version :10

Sequence 1:NP_009102.4 Gene:POMT1 / 10585 HGNCID:9202 Length:747 Species:Homo sapiens
Sequence 2:NP_001006756.1 Gene:pomt1 / 448433 XenbaseID:XB-GENE-944435 Length:725 Species:Xenopus tropicalis


Alignment Length:745 Identity:512/745 - (68%)
Similarity:610/745 - (81%) Gaps:28/745 - (3%)


- Green bases have known domain annotations that are detailed below.


Human     5 LKRPVVVTADINLSLVALTGMGLLSRLWRLTYPRAVVFDEVYYGQYISFYMKQIFFLDDSGPPFG 69
            ||.|:|||..|:|..||||.:||:||||||:||:|||||||||||:||.|||:||:|||||||.|
 Frog     5 LKSPLVVTVAIDLHFVALTILGLVSRLWRLSYPQAVVFDEVYYGQFISLYMKRIFYLDDSGPPLG 69

Human    70 HMVLALGGYLGGFDGNFLWNRIGAEYSSNVPVWSLRLLPALAGALSVPMAYQIVLELHFSHCAAM 134
            ||:||||||:..|||||:|||||||||||||||||||||||:|||.||:|||||:||.||..|.:
 Frog    70 HMLLALGGYVADFDGNFMWNRIGAEYSSNVPVWSLRLLPALSGALCVPLAYQIVVELGFSARAGL 134

Human   135 GAALLMLIENALITQSRLMLLESVLIFFNLLAVLSYLKFFNCQKHSPFSLSWWFWLTLTGVACSC 199
            .|..|:|.||||||||||||||||||||.|||:||||||..||:.||||:||||||.|||::|:.
 Frog   135 AAGFLLLFENALITQSRLMLLESVLIFFILLALLSYLKFHGCQRRSPFSVSWWFWLLLTGISCTF 199

Human   200 AVGIKYMGVFTYVLVLGVAAVHAWHLLGDQTLSNVGADVQCCMRPACMGQMQMSQGVCVFCHLLA 264
            |:|:||||:|:|:|:|||||||.|.|:|||||.|                      |.:..||||
 Frog   200 AIGVKYMGLFSYLLILGVAAVHYWQLIGDQTLGN----------------------VWLLFHLLA 242

Human   265 RAVALLVIPVVLYLLFFYVHLILVFRSGPHDQIMSSAFQASLEGGLARITQGQPLEVAFGSQVTL 329
            |.:|||::||:|||..||:||.::.||||||.||||||||||||||:|||:||||||.:|||:||
 Frog   243 RCLALLLMPVLLYLGIFYLHLSILTRSGPHDHIMSSAFQASLEGGLSRITEGQPLEVVYGSQITL 307

Human   330 RNVFGKPVPCWLHSHQDTYPMIYENGRGSSHQQQVTCYPFKDVNNWWIVKDPRRHQLVVSSPPRP 394
            :|..|||||||||||:.|||:.||.||||||||||||||:||||||||||||.|.|:||.|||||
 Frog   308 KNTLGKPVPCWLHSHKHTYPVRYEGGRGSSHQQQVTCYPYKDVNNWWIVKDPARQQMVVDSPPRP 372

Human   395 VRHGDMVQLVHGMTTRSLNTHDVAAPLSPHSQEVSCYIDYNISMPAQNLWRLEIVNRGSDTDVWK 459
            :||||.|||:|||:.|.|||||||||.||:|||||||||||||||||:||::|||||.||.|.||
 Frog   373 IRHGDTVQLLHGMSARFLNTHDVAAPFSPYSQEVSCYIDYNISMPAQSLWKVEIVNRESDMDTWK 437

Human   460 TILSEVRFVHVNTSAVLKLSGAHLPDWGYRQLEIVGEKLSRGYHGSTVWNVEEHRYGASQEQRER 524
            ||:|||:.:||||||.|||||..|||||:||||:||:|.|:.||.|.||||||||||.||||.||
 Frog   438 TIISEVKLIHVNTSAALKLSGTALPDWGFRQLEVVGDKASKSYHQSLVWNVEEHRYGRSQEQSER 502

Human   525 ERELHSPAQVDVSRNLSFMARFSELQWRMLALRSDDSEHKYSSSPLEWVTLDTNIAYWLHPRTSA 589
            |:|||:...:||.||||||:||.||||:||.:|::.|||||||.|::|:|:||:|||||||:::|
 Frog   503 EQELHTSPHIDVGRNLSFMSRFWELQWKMLTMRTESSEHKYSSYPMDWITMDTSIAYWLHPKSTA 567

Human   590 QIHLLGNIVIWVSGSLALAIYALLSLWYLLRRRRNVHDLPQDAWLRWVLAGALCAGGWAVNYLPF 654
            ||.||||.|||.|.:|...||:.|.::||||:||.::|:||.:|....|.|.|..||||||||||
 Frog   568 QIQLLGNPVIWNSANLGALIYSALLIFYLLRQRRRIYDIPQGSWEALQLTGVLFLGGWAVNYLPF 632

Human   655 FLMEKTLFLYHYLPALTFQILLLPVVLQHISDHLCRSQLQRSIFSALVVAWYSSACHVSNTLR-- 717
            |||||||||||||||||.||||||.:|:|:..||.||:..::.|:||::.|   .|.|..|.|  
 Frog   633 FLMEKTLFLYHYLPALTCQILLLPPLLEHLHQHLLRSEALQNTFAALLLVW---GCSVYLTYRKI 694

Human   718 -PLTYGDKSLSPHELKALRWKDSWDILIRK 746
             ||||||..|||.||::|||||:|||||||
 Frog   695 CPLTYGDPPLSPAELRSLRWKDNWDILIRK 724

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
POMT1NP_009102.4 PMT 20..289 CDD:396786 181/268 (68%)
beta-trefoil_MIR_POMT1 321..515 CDD:467752 148/193 (77%)
PMT_4TMC 544..738 CDD:465056 117/196 (60%)
pomt1NP_001006756.1 PMT 20..267 CDD:396786 181/268 (68%)
beta-trefoil_MIR_POMT1 299..493 CDD:467752 148/193 (77%)
PMT_4TMC 522..716 CDD:465056 117/196 (60%)

Return to query results.
Submit another query.