DRSC/TRiP Functional Genomics Resources

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Protein Alignment POMT1 and R12E2.13

DIOPT Version :10

Sequence 1:NP_009102.4 Gene:POMT1 / 10585 HGNCID:9202 Length:747 Species:Homo sapiens
Sequence 2:NP_491320.1 Gene:R12E2.13 / 172010 WormBaseID:WBGene00020038 Length:206 Species:Caenorhabditis elegans


Alignment Length:195 Identity:51/195 - (26%)
Similarity:74/195 - (37%) Gaps:47/195 - (24%)


- Green bases have known domain annotations that are detailed below.


Human   341 LHSHQDTYPMIYENGRGSSHQQQVTCYPFKDVNNWWIVKDPRRHQLVVSSPPR-----PVRHGDM 400
            ||||...|      |.||..|.........|:|:.|        |:..:...:     .::.||.
 Worm    43 LHSHDVKY------GSGSGQQSVTAVKNSDDINSHW--------QIFPALNAKCNRGDAIKCGDK 93

Human   401 VQLVHGMTTRSLNTHDVAAPLSPHSQEVSCYIDYNISMPAQNLWRLEIVNRGSDT-DVWKTILS- 463
            ::|.|..|...|::|...||||...||||.:     ...|:           ||| |.|..|.: 
 Worm    94 IRLKHLTTGTFLHSHHFTAPLSKQHQEVSAF-----GSEAE-----------SDTGDDWTVICNG 142

Human   464 -------EVRFVHVNTSAVLKLSGAHLPDWGYRQLEIVGEKLSRGYHGSTVWNVEEHRYGASQEQ 521
                   :.:..|..|.:.|.|||.......:.|.|:||   :....|.:.|.|.|..|...|::
 Worm   143 DEWLESEQFKLRHAVTGSYLSLSGQQFGRPIHGQREVVG---TDSITGGSAWKVAEGIYIKHQQK 204

Human   522  521
             Worm   205  204

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
POMT1NP_009102.4 PMT 20..289 CDD:396786
beta-trefoil_MIR_POMT1 321..515 CDD:467752 49/187 (26%)
PMT_4TMC 544..738 CDD:465056
R12E2.13NP_491320.1 beta-trefoil_MIR_SDF2_meta 26..201 CDD:467764 50/190 (26%)
Blue background indicates that the domain is not in the aligned region.

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