Protein Alignment RPP38 and Rpp38

DIOPT Version :9

• Sequence 1: NP_001091059.1
• Gene: RPP38 / 10557
• HGNCID: 30329
• Length: 283
• Species: Homo sapiens
• Sequence 2: XP_030105367.1
• Gene: Rpp38 / 227522
• MGIID: 2443607
• Length: 350
• Species: Mus musculus
• Alignment Length: 285
• Identity: 216/285 - (75%)
• Similarity: 240/285 - (84%)
• Gaps: 7/285 - (2%)

Human     1 MAAAPQAPGRGSLRKTRPLVVKTSLNNPYIIRWSALESEDMHFILQTLEDRLKAIGLQKIEDKKK 65
            ||||||||.|||:||||||||||||||||:|.||.||.||:||||||||.:.|.|||||||||||
Mouse    71 MAAAPQAPKRGSIRKTRPLVVKTSLNNPYVISWSTLEREDIHFILQTLEAKFKLIGLQKIEDKKK 135

Human    66 KNKTPFLKKESREKCSIAVDISENLKEKKTDAKQQVSGWTPAHVRKQLAIGVNEVTRALERRELL 130
            :.||..:||:|   |...::|||:.||  .|....||||||.||||||.||||||||||||.|||
Mouse   136 RKKTALMKKQS---CRPDIEISEDPKE--PDGDVLVSGWTPVHVRKQLVIGVNEVTRALERNELL 195

Human   131 LVLVCKSVKPAMITSHLIQLSLSRSVPACQVPRLSERIAPVIGLKCVLALAFKKNTTDFVDEVRA 195
            |||||||||||:||||||||||||:|||||||:|||||||||||||||||.|:|||.||.|||.|
Mouse   196 LVLVCKSVKPAIITSHLIQLSLSRTVPACQVPQLSERIAPVIGLKCVLALGFRKNTRDFADEVEA 260

Human   196 IIPRVPSLSVPWLQDRIEDSGENLETEPLESQDRELLDTSFEDLSK-PKRKLADGRQAS-VTLQP 258
            ||||||||:||||.||.:...::|||||.||||.|:|||||:||:| .|||||:|.||| .||||
Mouse   261 IIPRVPSLNVPWLPDRTQGPTDSLETEPSESQDNEILDTSFDDLTKLSKRKLAEGGQASAATLQP 325

Human   259 LKIKKLIPNPNKIRKPPKSKKATPK 283
            ||||||||||:||||||||||:..|
Mouse   326 LKIKKLIPNPSKIRKPPKSKKSISK 350

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
RPP38	NP_001091059.1	Ribosomal_L7Ae	107..185	CDD:396000	69/77 (90%)
Rpp38	XP_030105367.1	Ribosomal_L7Ae	172..250	CDD:366537	69/77 (90%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	1	0.930	-	-		C83963330
Domainoid	1	1.000	138	1.000	Domainoid score	I36579
eggNOG	1	0.900	-	-		E1_COG1358
HGNC	1	1.500	-	-
Hieranoid	1	1.000	-	-
Homologene	1	1.000	-	-		H4680
Inparanoid	1	1.050	406	1.000	Inparanoid score	I13596
Isobase	1	0.950	-	0	Normalized mean entropy	S9695
NCBI	1	1.000	-	-
OMA	1	1.010	-	-		QHG39979
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	1	1.000	-	-		FOG0009589
OrthoInspector	1	1.000	-	-		oto125877
orthoMCL	1	0.900	-	-		OOG6_109504
Panther	1	1.100	-	-	LDO	PTHR46948
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	1	1.000	-	-		X7336
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	1	0.960	-	-
	17	17.210