DRSC/TRiP Functional Genomics Resources

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Protein Alignment SEMA3C and Sema1a

DIOPT Version :9

Sequence 1:NP_001337049.1 Gene:SEMA3C / 10512 HGNCID:10725 Length:769 Species:Homo sapiens
Sequence 2:NP_001260265.1 Gene:Sema1a / 34192 FlyBaseID:FBgn0011259 Length:1131 Species:Drosophila melanogaster


Alignment Length:592 Identity:173/592 - (29%)
Similarity:291/592 - (49%) Gaps:102/592 - (17%)


- Green bases have known domain annotations that are detailed below.


Human    76 LMDEDQDRIYVGSKDHILSLNINNISQEALSVFWPASTIKVEECKMAGKDPTHGCGNFVRVIQTF 140
            |:.:|.:.:.:|:::.:.:|:|:::.::...| |.:.....:.|.:.||| ...|.|::|::...
  Fly    99 LVTKDGNSLLIGARNTVFNLSIHDLVEQQRLV-WTSPEDDTKMCLVKGKD-EEACQNYIRIMVVP 161

Human   141 NRTHLYVCGSGAFSPVC-TYLNRGRRSEDQVFMIDSKCESGKGRCSFNPNVNTVSVMINEELFSG 204
            :...|:|||:.:|.|:| ||:     ..|..:.::: .::|:..|.::|..|:.||:.:.||:||
  Fly   162 SPGRLFVCGTNSFRPMCNTYI-----ISDSNYTLEA-TKNGQAVCPYDPRHNSTSVLADNELYSG 220

Human   205 MYIDFMGTDAAIFRSLTKRNAVRTDQHNSKWLSEPMFVDAHVIPDGTDPNDAKVYFFFKEKLTDN 269
            ...||.|:|..|:     |..::|:|::|..|:.|.||.:....|       .|||||:|...:.
  Fly   221 TVADFSGSDPIIY-----REPLQTEQYDSLSLNAPNFVSSFTQGD-------FVYFFFRETAVEF 273

Human   270 NRSTKQIHSMIARICPNDTGGLRSLVNKWTTFLKARLVCSVTDEDGPETHFDELEDVFLL---ET 331
            ....|.|:|.:||:|..|.||.....|:||:|||:||.||:.. |.| .:|:|::....|   :.
  Fly   274 INCGKAIYSRVARVCKWDKGGPHRFRNRWTSFLKSRLNCSIPG-DYP-FYFNEIQSASNLVEGQY 336

Human   332 DNPRTTLVYGIFTTSSSVFKGSAVCVYHLSDIQTVFNGPFAHKEGPNHQLISY-QGRIPYPRPGT 395
            .:..:.|:||:|.|.|:...|||||.:.|.||...|.|.|..:.|.|...:.. ..::|.||||:
  Fly   337 GSMSSKLIYGVFNTPSNSIPGSAVCAFALQDIADTFEGQFKEQTGINSNWLPVNNAKVPDPRPGS 401

Human   396 CPGGAFTPNMRTTKEFPDDVVTFIRNHPLMYNSIYPIHKRPLIVRIGTDYKYTKIAVD-RVNAAD 459
            |        ...::..||..:.||:.|.||..::.....:|::||..|.|::|:|||| ::....
  Fly   402 C--------HNDSRALPDPTLNFIKTHSLMDENVPAFFSQPILVRTSTIYRFTQIAVDAQIKTPG 458

Human   460 GR-YHVLFLGTDRGTVQKVVVLPTNNSVS--GELILEELEVFKNHAPITTMKISSKKQ------- 514
            |: |.|:|:|||.|.:.|.|...:.:|..  ..:::||::|.....||..::|....|       
  Fly   459 GKTYDVIFVGTDHGKIIKSVNAESADSADKVTSVVIEEIDVLTKSEPIRNLEIVRTMQYDQPKDG 523

Human   515 -----QLYVSSNEGVSQVSLHRCH---IYGTACADCCLARDPYCAWD-------GHSCSR----- 559
                 :|.:.::..|..:.|||||   |  |:|::|...:|||||||       .|...|     
  Fly   524 SYDDGKLIIVTDSQVVAIQLHRCHNDKI--TSCSECVALQDPYCAWDKIAGKCRSHGAPRWLEEN 586

Human   560 -FY-----------PTGKRRSRRQDVRHGNPLTQCRGFNLKAYRNAAEIVQYGVKNNTTFLECAP 612
             ||           |:||..|:.                    .||.|  |.|.:|:...|:...
  Fly   587 YFYQNVATGQHAACPSGKINSKD--------------------ANAGE--QKGFRNDMDLLDSRR 629

Human   613 KSPQASI 619
            :|....|
  Fly   630 QSKDQEI 636

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SEMA3CNP_001337049.1 Sema_3C 63..532 CDD:200512 142/476 (30%)
PSI 531..568 CDD:214655 21/63 (33%)
Ig_Semaphorin_classIII 593..682 CDD:143279 8/27 (30%)
Sema1aNP_001260265.1 Sema_1A 91..546 CDD:200498 142/476 (30%)
PSI 545..>579 CDD:214655 15/35 (43%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3611
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11036
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
43.910

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