DRSC/TRiP Functional Genomics Resources

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Protein Alignment SEMA4F and Sema1b

DIOPT Version :9

Sequence 1:NP_004254.2 Gene:SEMA4F / 10505 HGNCID:10734 Length:770 Species:Homo sapiens
Sequence 2:NP_001163178.1 Gene:Sema1b / 37007 FlyBaseID:FBgn0016059 Length:770 Species:Drosophila melanogaster


Alignment Length:810 Identity:214/810 - (26%)
Similarity:343/810 - (42%) Gaps:162/810 - (20%)


- Green bases have known domain annotations that are detailed below.


Human     5 AARPRPGPGQPTASPFPLLLLAVLSG--PVSGRVPRSVPRTSLPISEADSCLTRFAVPHTYNYSV 67
            :::.||.......:..|::||..|||  .|:|.:|...|...   ::.|..|..|....|..:.:
  Fly     2 SSKSRPSSAAMLVNAIPMILLITLSGLTIVAGWMPDVKPDLQ---TKQDKVLAHFIGNSTDYFKI 63

Human    68 LLVDPASHTLYVGARDTIFALSLPFSG-ERPRRIDWMVPEAHRQNCRKKGKKEDECHNFVQILAI 131
            |  |.....:.|||:|.|:.:||  :| :...|::|...:|.|:.|..|||.|.:|||::::.|:
  Fly    64 L--DHNDEFVLVGAKDVIYNVSL--NGLKEIARLEWHSTDADRELCALKGKHEWDCHNYLRVYAL 124

Human   132 ANASHLLTCGTFAFDPKC---GVIDVSRFQ------------QVERLESGRGKCPFEPAQRSAAV 181
            .....:|.|||.::.|:|   ..::||..:            :|.|....:|.||:.||..|...
  Fly   125 RPNGEVLLCGTNSYKPRCRHYTPVEVSSEEAGSAGHAHAMRYEVSRDVEAQGLCPYSPAHNSTYA 189

Human   182 MAGGVLYAATVKNYLGTEPIITRAVGRAEDWIRTDTLPSWLNAPAFVAAVALSPAEWGDEDGDDE 246
            .|.|.||:|||.::.|.:|:|.|...|.|.:....     ||.|.||.|:          :.:..
  Fly   190 FADGHLYSATVADFSGGDPLIYRENLRTEQYDLKQ-----LNQPDFVGAI----------ERNGY 239

Human   247 IYFFFTETSRAFDSYERIKVPRVARVCAGDLGGRKTLQQRWTTFLKADLLCPGPEHGRASSVLQD 311
            :.|||.|.|....::.:....||||||..|.||..:..:.||:||||.|.|..|  |.......:
  Fly   240 VLFFFRELSMEVMNFGKAVYSRVARVCKNDRGGPYSHGKSWTSFLKARLNCSVP--GEFPFYFDE 302

Human   312 VAVLRPELGAGT-PIFYGIFSSQWEGATISAVCAFRPQDIRTVLNGPFRELKHDCNRGLPVVDND 375
            :..:.|.:.:|: .:.|.:|::.......||||||...||....:|.|:..|...:..|||....
  Fly   303 IQAISPIVESGSKSLIYAVFTTSVNAIPGSAVCAFNVDDILAAFDGEFKSQKDSQSHWLPVEREQ 367

Human   376 VPQPRPGECITNNMKLRHFGSSLSLPDRVLTFIRDHPLMDRPVFPADGHPLLVTTDTAY--LRVV 438
            ||:||||:|:.:         |.:|....:.||::||||:..|....|.|||...:..:  ..:.
  Fly   368 VPKPRPGQCVED---------SRTLTSIAVNFIKNHPLMEEAVPAVHGRPLLTKVNLHHRLTAIA 423

Human   439 AH-RVTSLSGKEYDVLYLGTEDGHLHRAVRIGAQLS-------------VLEDLALFPEPQPVEN 489
            .| :|.||||..|||:|.||:||.:.:.:.|   ||             |:.::.:.|...|:..
  Fly   424 VHPQVKSLSGAYYDVIYSGTDDGKVTKFINI---LSTHPNSTVDRLKTVVISEMQVLPLGTPIRE 485

Human   490 MKLYHS--WLLVGSRTEVTQVNTTNCGRLQSCSECILAQDPVCAWSFRLDECVAHA-GEH----R 547
            :.:..|  .|:|.|...:..|...:|..:..|..|:..|||:|||..:..||...| .:|    :
  Fly   486 LVISTSKNSLVVVSDGSLVSVPLHHCSHIVDCLGCLSLQDPICAWDLQTHECKNLATSQHKFGTK 550

Human   548 GLVQDIESADVSS--LCPKEPGERP------VVFEVPVATAAHVVLPCSPSSAWAS--CVWHQPS 602
            ..:|.:.|...::  |||..|.:.|      .|...|..|....:|..:..|:..:  .:..||:
  Fly   551 TYLQSLNSTKKAAALLCPHIPRDAPGAETVSFVTMAPPPTEEQKLLYSNVGSSQGNQPSLEQQPT 615

Human   603 G----------VTALTP---------------RRDGLEVVVTPGAM------------GAYACEC 630
            |          :|::.|               ..|.::...||..|            |..|..|
  Fly   616 GGDDFGLNKITLTSMDPDDIMPNLNDPQKSTASVDEIKYASTPSFMLLTTIVFFTFLVGGIAGIC 680

Human   631 QEGGAAHVVAAYSLVWGSQRDAPSRAHTVGAGLAGFFLGILAASLTLILIGRRQQRRRQRELLAR 695
                   .|.|.|.:..:|.|...|.|                      .|:..|.:.|      
  Fly   681 -------CVKAKSRLMEAQMDESHRNH----------------------FGKPMQFKHQ------ 710

Human   696 DKVGLDLGAPPSGTTSYSQDPPSPSPEDER 725
             ..|.|:.. ..|:.:|:....:|:.:.|:
  Fly   711 -NTGKDINL-LMGSNAYTTTQKTPNLDLEK 738

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SEMA4FNP_004254.2 Sema_4F 52..511 CDD:200522 148/493 (30%)
PSI 512..563 CDD:279745 16/57 (28%)
Ig_Sema4B_like 570..649 CDD:143280 21/123 (17%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 696..725 5/28 (18%)
PDZ-binding. /evidence=ECO:0000250|UniProtKB:Q9Z123 768..770
Sema1bNP_001163178.1 Sema_1A 55..511 CDD:200498 146/488 (30%)
PSI 510..>537 CDD:214655 9/26 (35%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3611
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11036
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
32.910

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