| Sequence 1: | NP_006363.4 | Gene: | SYNCRIP / 10492 | HGNCID: | 16918 | Length: | 623 | Species: | Homo sapiens |
|---|---|---|---|---|---|---|---|---|---|
| Sequence 2: | NP_015437.1 | Gene: | MRD1 / 856228 | SGDID: | S000006316 | Length: | 887 | Species: | Saccharomyces cerevisiae |
| Alignment Length: | 531 | Identity: | 110/531 - (20%) |
|---|---|---|---|
| Similarity: | 181/531 - (34%) | Gaps: | 179/531 - (33%) |
- Green bases have known domain annotations that are detailed below.
|
Human 16 DTTSAV-----IHSENFQTLLDAGLP--QKVAEKLDEIYVAG--LVAHSDLDERAIEALKEF--- 68
Human 69 ----NED---GALAVLQQFKDSDLSHVQNKS---------AFLCGVMKTYRQREKQGTKVADSSK 117
Human 118 GPDEAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSGQQPSVGTEIFVGKIPRDLFEDELVPLF 182
Human 183 EKAGPIWDLRLMMDP-----------LTGLNRGYAFVTF----------------C-TKEAAQEA 219
Human 220 VKLYNNHEIR--------------------------SGKHIGVCISVANNRLFVGSIPKSKTKEQ 258
Human 259 ILEEFSKVTEGLTDVILYHQPDDKKKNR----GFCFLEY------------------EDHKTAAQ 301
Human 302 A--RRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFSQFGKL 364
Human 365 ERV-------KKLKDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAK------PPDQKRKER 416
Human 417 KAQRQAAKNQM 427 |
| Gene | Sequence | Domain | Region | External ID | Identity |
|---|---|---|---|---|---|
| SYNCRIP | NP_006363.4 | NURR_hnRNPQ | 23..107 | CDD:410954 | 24/106 (23%) |
| hnRNP-R-Q | 103..615 | CDD:273732 | 83/416 (20%) | ||
| Interaction with APOBEC1 | 400..561 | 7/34 (21%) | |||
| 8 X 3 AA repeats of R-G-G | 448..559 | ||||
| 3 X 4 AA repeats of Y-Y-G-Y | 460..488 | ||||
| Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 497..623 | ||||
| Interaction with SMN. /evidence=ECO:0000269|PubMed:11574476 | 518..549 | ||||
| Bipartite nuclear localization signal. /evidence=ECO:0000255 | 564..578 | ||||
| MRD1 | NP_015437.1 | RRM4_MRD1 | 663..746 | CDD:409758 | 16/83 (19%) |
| RRM5_MRD1 | 763..837 | CDD:241014 | 19/73 (26%) | ||
| RRM1_RBM19_MRD1 | 2..92 | CDD:409754 | |||
| RRM | 222..612 | CDD:223796 | 54/257 (21%) | ||
| RRM2_MRD1 | 343..421 | CDD:409982 | 7/25 (28%) | ||
| RRM3_MRD1 | 532..603 | CDD:241012 | 13/83 (16%) | ||
| Blue background indicates that the domain is not in the aligned region. | |||||
| Tool | Simple Score | Weighted Score | Original Tool Information | |||
|---|---|---|---|---|---|---|
| BLAST Result | Score | Score Type | Cluster ID | |||
| Compara | 0 | 0.000 | Not matched by this tool. | |||
| Domainoid | 0 | 0.000 | Not matched by this tool. | |||
| eggNOG | 0 | 0.000 | Not matched by this tool. | |||
| Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
| Homologene | 0 | 0.000 | Not matched by this tool. | |||
| Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
| Isobase | 0 | 0.000 | Not matched by this tool. | |||
| OMA | 0 | 0.000 | Not matched by this tool. | |||
| OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
| OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
| orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
| Panther | 0 | 0.000 | Not matched by this tool. | |||
| Phylome | 1 | 0.910 | - | - | ||
| RoundUp | 0 | 0.000 | Not matched by this tool. | |||
| SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
| SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
| TreeFam | 0 | 0.000 | Not matched by this tool. | |||
| 1 | 0.910 | |||||