DRSC/TRiP Functional Genomics Resources

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Protein Alignment SYNCRIP and maca

DIOPT Version :10

Sequence 1:NP_006363.4 Gene:SYNCRIP / 10492 HGNCID:16918 Length:623 Species:Homo sapiens
Sequence 2:NP_650473.1 Gene:maca / 41892 FlyBaseID:FBgn0038345 Length:251 Species:Drosophila melanogaster


Alignment Length:322 Identity:68/322 - (21%)
Similarity:122/322 - (37%) Gaps:99/322 - (30%)


- Green bases have known domain annotations that are detailed below.


Human   122 AKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSGQQPS--VGTEIFVGKIPRDLFEDELVPLFEK 184
            |.|:.:.: ||..:|          |||      ..|:  :.|.:.:..:|:|:.|.||..||.|
  Fly    16 AGIRGMFQ-TGRPVD----------PPP------PLPNLRMKTNLILNYLPQDMTESELHRLFSK 63

Human   185 AGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCIS------VANN 243
            .|.|...:::....||::..|.||.:.::..|..||...:.:|.| ||.:.|..:      ..::
  Fly    64 FGEIRKAKIIRHRRTGISCCYGFVDYVSERQAAAAVNGMDGYETR-GKRLKVAFARPSEYESTSS 127

Human   244 RLFVGSIPKSKTKEQILEEFSKVTEG-LTDV-ILYHQPDDKKKNRGFCFLEYE---DHKTAAQAR 303
            .|:||::|....::::.|.|:  |.| :.|| :|.|:.::  ::||..||::|   |.:.|....
  Fly   128 SLYVGNLPTYMDEKKVRELFA--TYGNIVDVNLLRHKFNN--RSRGVAFLQFELVRDAEVAKYGM 188

Human   304 RRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVK 368
            .|.|                                  :...:..:|.:.:|:            
  Fly   189 DRYM----------------------------------IEGASRPLTVKFVER------------ 207

Human   369 KLKDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQKRKERKAQRQAAKNQMYDD 430
                       |:.|:.........||...       :.||..||:||......:|.....|
  Fly   208 -----------EKKGSSSTSSGSQYKDKRK-------SSPPPYKRRERTNDHHVSKRSRDSD 251

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SYNCRIPNP_006363.4 NURR_hnRNPQ 23..107 CDD:410954
hnRNP-R-Q 103..615 CDD:273732 68/322 (21%)
Interaction with APOBEC1 400..561 8/31 (26%)
8 X 3 AA repeats of R-G-G 448..559
3 X 4 AA repeats of Y-Y-G-Y 460..488
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 497..623
Interaction with SMN. /evidence=ECO:0000269|PubMed:11574476 518..549
Bipartite nuclear localization signal. /evidence=ECO:0000255 564..578
macaNP_650473.1 sex-lethal <41..>210 CDD:273740 48/230 (21%)
Blue background indicates that the domain is not in the aligned region.

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