| Sequence 1: | NP_006363.4 | Gene: | SYNCRIP / 10492 | HGNCID: | 16918 | Length: | 623 | Species: | Homo sapiens |
|---|---|---|---|---|---|---|---|---|---|
| Sequence 2: | NP_999861.1 | Gene: | syncrip / 326663 | ZFINID: | ZDB-GENE-030131-4862 | Length: | 630 | Species: | Danio rerio |
| Alignment Length: | 630 | Identity: | 550/630 - (87%) |
|---|---|---|---|
| Similarity: | 588/630 - (93%) | Gaps: | 7/630 - (1%) |
- Green bases have known domain annotations that are detailed below.
|
Human 1 MATEHVNGNGTEEPMDTTSAVIHSENFQTLLDAGLPQKVAEKLDEIYVAGLVAHSDLDERAIEAL 65
Human 66 KEFNEDGALAVLQQFKDSDLSHVQNKSAFLCGVMKTYRQREKQGTKVADSSKGPDEAKIKALLER 130
Human 131 TGYTLDVTTGQRKYGGPPPDSVYSGQQPSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMM 195
Human 196 DPLTGLNRGYAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQIL 260
Human 261 EEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADP 325
Human 326 IEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEE 390
Human 391 MNGKDLEGENIEIVFAKPPDQKRKERKAQRQAAKNQMYDDYYYYGPPHMPPPTRGRGRG-GRGGY 454
Human 455 GYPPDYYGYEDYYDYYGYDYHNYRGGYEDPYYGYEDFQVGARGRGGRGAR--GAAPSRGRGAAPP 517
Human 518 RGRAGYSQRG----GPGSARGVRGARGGAQQQRGRGVRGARGGRGGNVGGKRKADGYNQPDSKRR 578
Human 579 QTNNQNWGSQPIAQQPLQGGDHSGNYGYKSENQEFYQDTFGQQWK 623 |
| Gene | Sequence | Domain | Region | External ID | Identity |
|---|---|---|---|---|---|
| SYNCRIP | NP_006363.4 | NURR_hnRNPQ | 23..107 | CDD:410954 | 74/83 (89%) |
| hnRNP-R-Q | 103..615 | CDD:273732 | 454/518 (88%) | ||
| Interaction with APOBEC1 | 400..561 | 130/167 (78%) | |||
| 8 X 3 AA repeats of R-G-G | 448..559 | 84/117 (72%) | |||
| 3 X 4 AA repeats of Y-Y-G-Y | 460..488 | 25/27 (93%) | |||
| Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 497..623 | 103/131 (79%) | |||
| Interaction with SMN. /evidence=ECO:0000269|PubMed:11574476 | 518..549 | 18/34 (53%) | |||
| Bipartite nuclear localization signal. /evidence=ECO:0000255 | 564..578 | 13/13 (100%) | |||
| syncrip | NP_999861.1 | hnRNP-R-Q | 103..622 | CDD:273732 | 454/518 (88%) |
| RRM1_hnRNPQ | 161..239 | CDD:240927 | 72/77 (94%) | ||
| RRM2_hnRNPQ | 241..325 | CDD:240933 | 80/83 (96%) | ||
| RRM3_hnRNPQ | 337..408 | CDD:240939 | 60/70 (86%) |
| Tool | Simple Score | Weighted Score | Original Tool Information | |||
|---|---|---|---|---|---|---|
| BLAST Result | Score | Score Type | Cluster ID | |||
| Compara | 1 | 0.930 | - | - | C194331529 | |
| Domainoid | 1 | 1.000 | 262 | 1.000 | Domainoid score | I9054 |
| eggNOG | 1 | 0.900 | - | - | E1_KOG0117 | |
| Hieranoid | 1 | 1.000 | - | - | ||
| Homologene | 1 | 1.000 | - | - | H4648 | |
| Inparanoid | 1 | 1.050 | 993 | 1.000 | Inparanoid score | I2356 |
| NCBI | 1 | 1.000 | - | - | ||
| OMA | 1 | 1.010 | - | - | QHG49453 | |
| OrthoDB | 1 | 1.010 | - | - | D1384330at2759 | |
| OrthoFinder | 1 | 1.000 | - | - | FOG0000581 | |
| OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
| orthoMCL | 1 | 0.900 | - | - | OOG6_104511 | |
| Panther | 1 | 1.100 | - | - | LDO | PTHR21245 |
| Phylome | 1 | 0.910 | - | - | ||
| RoundUp | 1 | 1.030 | - | avgDist | Average_Evolutionary_Distance | R9312 |
| SonicParanoid | 1 | 1.000 | - | - | X331 | |
| SwiftOrtho | 1 | 1.000 | - | - | ||
| TreeFam | 1 | 0.960 | - | - | ||
| ZFIN | 1 | 1.500 | - | - | ||
| 18 | 18.300 | |||||